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   <dataset id="HF270">
      <alternateIdentifier system="https://doi.org">doi:10.6073/pasta/e286e622135a2d4171adb37de2e7c0a0</alternateIdentifier>
      <title>Monitoring Amphibians in the Declined Hemlocks at Harvard Forest 2013-2014</title>
      <creator>
         <individualName>
            <givenName>Aaron</givenName>
            <surName>Ellison</surName>
         </individualName>
         <userId directory="https://orcid.org">https://orcid.org/0000-0003-4151-6081</userId>
      </creator>
      <creator>
         <individualName>
            <givenName>Ahmed</givenName>
            <surName>Siddig</surName>
         </individualName>
         <userId directory="https://orcid.org">https://orcid.org/0000-0002-8145-0964</userId>
      </creator>
      <pubDate>2023</pubDate>
      <language>English</language>
      <abstract>
         <section>
            <para>Disturbances such as outbreaks of nonnative insects and pathogens can devastate unique habitats and directly reduce biodiversity. The foundation tree species Tsuga canadensis (eastern hemlock) is declining due to infestation by the nonnative insect Adelges tsugae (hemlock woolly adelgid). The decline and expected elimination of hemlock from northeastern US forests is changing forest structure, function, and assemblages of associated species. We assessed changes in occupancy, detection probability, and relative abundance of two species of terrestrial salamanders, Plethodon cinereus (eastern red-back salamander) and Notopthalmus viridescens viridescens (eastern red-spotted newt), in the experimental removal of T. canadensis at Harvard Forest. Four treatments (logging, girdling, hemlock control and hardwood control) have been applied and replicated in eight 0.81-ha plots. Salamanders were sampled under cover boards and using visual encounter surveys in June-July of 2013 and 2014.</para>
            <para>Removal of the hemlock canopy increased occupancy of P. cinereus but significantly reduced its estimated detection probability and abundance. Estimated abundance of N. v. viridescens also declined dramatically after canopy manipulations. Our results suggest that ten years after hemlock loss due to either the adelgid or pre-emptive salvage logging, and 50-70 years later when these forests have become mid-successional mixed deciduous stands, that the abundance of these salamanders likely will be less than 50% of their abundance in current, intact hemlock stands.</para>
         </section>
      </abstract>
      <keywordSet>
         <keyword>abundance</keyword>
         <keyword>amphibians</keyword>
         <keyword>hemlock</keyword>
         <keyword>monitoring</keyword>
         <keyword>salamanders</keyword>
         <keywordThesaurus>LTER controlled vocabulary</keywordThesaurus>
      </keywordSet>
      <keywordSet>
         <keyword>populations</keyword>
         <keyword>disturbance</keyword>
         <keywordThesaurus>LTER core area</keywordThesaurus>
      </keywordSet>
      <keywordSet>
         <keyword>Harvard Forest</keyword>
         <keyword>HFR</keyword>
         <keyword>LTER</keyword>
         <keyword>USA</keyword>
         <keywordThesaurus>HFR default</keywordThesaurus>
      </keywordSet>
      <intellectualRights>
         <section>
            <para>This dataset is released to the public under Creative Commons CC0 1.0 (No Rights Reserved). Please keep the dataset creators informed of any plans to use the dataset. Consultation with the original investigators is strongly encouraged. Publications and data products that make use of the dataset should include proper acknowledgement.</para>
         </section>
      </intellectualRights>
      <licensed>
         <licenseName>Creative Commons Zero v1.0 Universal</licenseName>
         <url>https://spdx.org/licenses/CC0-1.0.html</url>
         <identifier>CC0-1.0</identifier>
      </licensed>
      <distribution>
         <online>
            <url function="information">https://harvardforest.fas.harvard.edu/exist/apps/datasets/showData.html?id=hf270</url>
         </online>
      </distribution>
      <coverage>
         <geographicCoverage>
            <geographicDescription>Simes Tract (Harvard Forest). Coordinates based on WGS84 datum.</geographicDescription>
            <boundingCoordinates>
               <westBoundingCoordinate>-72.22</westBoundingCoordinate>
               <eastBoundingCoordinate>-72.21</eastBoundingCoordinate>
               <northBoundingCoordinate>+42.48</northBoundingCoordinate>
               <southBoundingCoordinate>+42.47</southBoundingCoordinate>
               <boundingAltitudes>
                  <altitudeMinimum>215</altitudeMinimum>
                  <altitudeMaximum>300</altitudeMaximum>
                  <altitudeUnits>meter</altitudeUnits>
               </boundingAltitudes>
            </boundingCoordinates>
         </geographicCoverage>
         <temporalCoverage>
            <rangeOfDates>
               <beginDate>
                  <calendarDate>2013</calendarDate>
               </beginDate>
               <endDate>
                  <calendarDate>2014</calendarDate>
               </endDate>
            </rangeOfDates>
         </temporalCoverage>
         <taxonomicCoverage>
            <taxonomicClassification>
               <taxonRankName>genus</taxonRankName>
               <taxonRankValue>Notophthalmus</taxonRankValue>
               <taxonomicClassification>
                  <taxonRankName>species</taxonRankName>
                  <taxonRankValue>viridescens</taxonRankValue>
                  <commonName>eastern red-spotted newt</commonName>
               </taxonomicClassification>
            </taxonomicClassification>
            <taxonomicClassification>
               <taxonRankName>genus</taxonRankName>
               <taxonRankValue>Plethodon</taxonRankValue>
               <taxonomicClassification>
                  <taxonRankName>species</taxonRankName>
                  <taxonRankValue>cinereus</taxonRankValue>
                  <commonName>red back salamander</commonName>
               </taxonomicClassification>
            </taxonomicClassification>
            <taxonomicClassification>
               <taxonRankName>genus</taxonRankName>
               <taxonRankValue>Tsuga</taxonRankValue>
               <taxonomicClassification>
                  <taxonRankName>species</taxonRankName>
                  <taxonRankValue>canadensis</taxonRankValue>
                  <commonName>eastern hemlock</commonName>
               </taxonomicClassification>
            </taxonomicClassification>
         </taxonomicCoverage>
      </coverage>
      <maintenance>
         <description>
            <para>complete</para>
         </description>
      </maintenance>
      <contact scope="document">
         <positionName>Information Manager</positionName>
         <organizationName>Harvard Forest</organizationName>
         <address scope="document">
            <deliveryPoint>324 North Main Street</deliveryPoint>
            <city>Petersham</city>
            <administrativeArea>MA</administrativeArea>
            <postalCode>01366</postalCode>
            <country>USA</country>
         </address>
         <phone phonetype="voice">(978) 724-3302</phone>
         <electronicMailAddress>hf-im@lists.fas.harvard.edu</electronicMailAddress>
      </contact>
      <publisher scope="document">
         <organizationName>Harvard Forest</organizationName>
         <address scope="document">
            <deliveryPoint>324 North Main Street</deliveryPoint>
            <city>Petersham</city>
            <administrativeArea>MA</administrativeArea>
            <postalCode>01366</postalCode>
            <country>USA</country>
         </address>
         <phone phonetype="voice">(978) 724-3302</phone>
         <phone phonetype="fax">(978) 724-3595</phone>
         <onlineUrl>https://harvardforest.fas.harvard.edu</onlineUrl>
      </publisher>
      <methods>
         <methodStep>
            <description>
               <section>
                  <para>We counted red-backs under artificial cover objects (ACOs) on two (in 2013), and five (in 2014) sampling dates from June and July of 2013 and 2014. During the second and third weeks of May 2013, five 1 × 0.25 × 0.02-m rough-sawn T. canadensis boards (ACOs) were placed at 15-m interval along two 75-m transects in each of the eight HF-HeRE plots. All ACOs were placed at least 15 m from the edge of the plots. In both years, we sampled all of the ACOs in all of the plots on the same day. The 1–2-week interval between sampling individual ACOs was sufficient to ensure that repeated sampling did not impact detection probability (Marsh and Goicocchea 2003).</para>
                  <para>Red efts were sampled using visual encounter surveys only in 2014, both concurrently with sampling ACOs for red-backs. The 2014 survey was done along two 60 × 1-m parallel transects separated by 30 m from one another. </para>
                  <para>All amphibian sampling methods were approved by Harvard University’s Institutional Animal Care and Use Committee (File 13-02-144; last updated June 02, 2014).</para>
               </section>
            </description>
         </methodStep>
      </methods>
      <project>
         <title>Harvard Forest Long-Term Ecological Research</title>
         <personnel>
            <organizationName>Harvard Forest</organizationName>
            <address>
               <deliveryPoint>324 North Main Street</deliveryPoint>
               <city>Petersham</city>
               <administrativeArea>MA</administrativeArea>
               <postalCode>01366</postalCode>
               <country>USA</country>
            </address>
            <phone phonetype="voice">(978) 724-3302</phone>
            <phone phonetype="fax">(978) 724-3595</phone>
            <onlineUrl>https://harvardforest.fas.harvard.edu</onlineUrl>
            <userId directory="https://ror.org">https://ror.org/059cpzx98</userId>
            <role>pointOfContact</role>
         </personnel>
         <abstract>The Harvard Forest Long-Term Ecological Research (LTER) program examines ecological dynamics in the New England region resulting from natural disturbances, environmental change, and human impacts.</abstract>
         <funding>National Science Foundation LTER grants: DEB-8811764, DEB-9411975, DEB-0080592, DEB-0620443, DEB-1237491, DEB-1832210.</funding>
      </project>
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         <entityName>hf270-01-red-backs-count.csv</entityName>
         <entityDescription>red backs count</entityDescription>
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            <objectName>hf270-01-red-backs-count.csv</objectName>
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                  <recordDelimiter>\r\n</recordDelimiter>
                  <attributeOrientation>column</attributeOrientation>
                  <simpleDelimited>
                     <fieldDelimiter>,</fieldDelimiter>
                  </simpleDelimited>
               </textFormat>
            </dataFormat>
            <distribution>
               <online>
                  <url function="download">https://harvardforest.fas.harvard.edu/data/p27/hf270/hf270-01-red-backs-count.csv</url>
               </online>
            </distribution>
         </physical>
         <attributeList>
            <attribute id="1457965599620">
               <attributeName>species</attributeName>
               <attributeDefinition>species</attributeDefinition>
               <measurementScale>
                  <nominal>
                     <nonNumericDomain>
                        <enumeratedDomain>
                           <codeDefinition>
                              <code>PLCI</code>
                              <definition>red-back salamander</definition>
                           </codeDefinition>
                        </enumeratedDomain>
                     </nonNumericDomain>
                  </nominal>
               </measurementScale>
               <missingValueCode>
                  <code>NA</code>
                  <codeExplanation>missing value</codeExplanation>
               </missingValueCode>
            </attribute>
            <attribute id="1457965599621">
               <attributeName>date</attributeName>
               <attributeDefinition>date of data collection</attributeDefinition>
               <measurementScale>
                  <dateTime>
                     <formatString>YYYY-MM-DD</formatString>
                     <dateTimePrecision>1 day</dateTimePrecision>
                  </dateTime>
               </measurementScale>
               <missingValueCode>
                  <code>NA</code>
                  <codeExplanation>missing value</codeExplanation>
               </missingValueCode>
            </attribute>
            <attribute id="1457965599622">
               <attributeName>block</attributeName>
               <attributeDefinition>topography of the study site</attributeDefinition>
               <measurementScale>
                  <nominal>
                     <nonNumericDomain>
                        <enumeratedDomain>
                           <codeDefinition>
                              <code>valley</code>
                              <definition>valley</definition>
                           </codeDefinition>
                           <codeDefinition>
                              <code>ridge</code>
                              <definition>ridge</definition>
                           </codeDefinition>
                        </enumeratedDomain>
                     </nonNumericDomain>
                  </nominal>
               </measurementScale>
               <missingValueCode>
                  <code>NA</code>
                  <codeExplanation>missing value</codeExplanation>
               </missingValueCode>
            </attribute>
            <attribute id="1457965599623">
               <attributeName>treatment</attributeName>
               <attributeDefinition>type of experimental treatments applied in the hemlock removal
      experiment</attributeDefinition>
               <measurementScale>
                  <nominal>
                     <nonNumericDomain>
                        <enumeratedDomain>
                           <codeDefinition>
                              <code>Girdled</code>
                              <definition>girdled</definition>
                           </codeDefinition>
                           <codeDefinition>
                              <code>Logged</code>
                              <definition>logged</definition>
                           </codeDefinition>
                           <codeDefinition>
                              <code>Hardwood Control</code>
                              <definition>hardwood control</definition>
                           </codeDefinition>
                           <codeDefinition>
                              <code>Hemlock Control</code>
                              <definition>hemlock control</definition>
                           </codeDefinition>
                        </enumeratedDomain>
                     </nonNumericDomain>
                  </nominal>
               </measurementScale>
               <missingValueCode>
                  <code>NA</code>
                  <codeExplanation>missing value</codeExplanation>
               </missingValueCode>
            </attribute>
            <attribute id="1457965599624">
               <attributeName>plot</attributeName>
               <attributeDefinition>plot number [1-8]. Each plot is 90×90m (0.81 ha).</attributeDefinition>
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                  <nominal>
                     <nonNumericDomain>
                        <textDomain>
                           <definition>plot number [1-8]. Each plot is 90×90m (0.81 ha).</definition>
                        </textDomain>
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                  </nominal>
               </measurementScale>
               <missingValueCode>
                  <code>NA</code>
                  <codeExplanation>missing value</codeExplanation>
               </missingValueCode>
            </attribute>
            <attribute id="1457965599625">
               <attributeName>transect</attributeName>
               <attributeDefinition>transect number in which data was collected [ 1- 2]. In each plot there
      are two 90-m transects.</attributeDefinition>
               <measurementScale>
                  <nominal>
                     <nonNumericDomain>
                        <textDomain>
                           <definition>transect number in which data was collected [ 1- 2]. In each plot there are two
          90-m transects.</definition>
                        </textDomain>
                     </nonNumericDomain>
                  </nominal>
               </measurementScale>
            </attribute>
            <attribute id="1457965599626">
               <attributeName>aco</attributeName>
               <attributeDefinition>location of Artificial Cover Object (ACO) in each
      transect</attributeDefinition>
               <measurementScale>
                  <nominal>
                     <nonNumericDomain>
                        <textDomain>
                           <definition>location of Artificial Cover Object (ACO) in each transect</definition>
                        </textDomain>
                     </nonNumericDomain>
                  </nominal>
               </measurementScale>
               <missingValueCode>
                  <code>NA</code>
                  <codeExplanation>missing value</codeExplanation>
               </missingValueCode>
            </attribute>
            <attribute id="1457965599627">
               <attributeName>sample.n</attributeName>
               <attributeDefinition>sampling occasion [1-7]</attributeDefinition>
               <measurementScale>
                  <nominal>
                     <nonNumericDomain>
                        <textDomain>
                           <definition>sampling occasion [1-7]</definition>
                        </textDomain>
                     </nonNumericDomain>
                  </nominal>
               </measurementScale>
               <missingValueCode>
                  <code>NA</code>
                  <codeExplanation>missing value</codeExplanation>
               </missingValueCode>
            </attribute>
            <attribute id="1457965599628">
               <attributeName>count</attributeName>
               <attributeDefinition>number of salamanders observed under each ACO in specific
      date</attributeDefinition>
               <measurementScale>
                  <ratio>
                     <unit>
                        <standardUnit>number</standardUnit>
                     </unit>
                     <precision>1</precision>
                     <numericDomain>
                        <numberType>whole</numberType>
                     </numericDomain>
                  </ratio>
               </measurementScale>
               <missingValueCode>
                  <code>NA</code>
                  <codeExplanation>missing value</codeExplanation>
               </missingValueCode>
            </attribute>
            <attribute id="1457965599629">
               <attributeName>rh</attributeName>
               <attributeDefinition>relative humidity at sampling date</attributeDefinition>
               <measurementScale>
                  <ratio>
                     <unit>
                        <standardUnit>dimensionless</standardUnit>
                     </unit>
                     <precision>1</precision>
                     <numericDomain>
                        <numberType>natural</numberType>
                     </numericDomain>
                  </ratio>
               </measurementScale>
               <missingValueCode>
                  <code>NA</code>
                  <codeExplanation>missing value</codeExplanation>
               </missingValueCode>
            </attribute>
         </attributeList>
         <numberOfRecords>640</numberOfRecords>
      </dataTable>
      <dataTable id="hf270-02">
         <entityName>hf270-02-red-efts-count.csv</entityName>
         <entityDescription>red efts count</entityDescription>
         <physical>
            <objectName>hf270-02-red-efts-count.csv</objectName>
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               <textFormat>
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                  <attributeOrientation>column</attributeOrientation>
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                     <fieldDelimiter>,</fieldDelimiter>
                  </simpleDelimited>
               </textFormat>
            </dataFormat>
            <distribution>
               <online>
                  <url function="download">https://harvardforest.fas.harvard.edu/data/p27/hf270/hf270-02-red-efts-count.csv</url>
               </online>
            </distribution>
         </physical>
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               <attributeName>species</attributeName>
               <attributeDefinition>species</attributeDefinition>
               <measurementScale>
                  <nominal>
                     <nonNumericDomain>
                        <enumeratedDomain>
                           <codeDefinition>
                              <code>NOVI</code>
                              <definition>red spotted newt (Notopthalmus viridescens viridescens)</definition>
                           </codeDefinition>
                        </enumeratedDomain>
                     </nonNumericDomain>
                  </nominal>
               </measurementScale>
               <missingValueCode>
                  <code>NA</code>
                  <codeExplanation>missing value</codeExplanation>
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               <attributeName>date</attributeName>
               <attributeDefinition>date of data collection</attributeDefinition>
               <measurementScale>
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                     <formatString>YYYY-MM-DD</formatString>
                     <dateTimePrecision>1 day</dateTimePrecision>
                  </dateTime>
               </measurementScale>
               <missingValueCode>
                  <code>NA</code>
                  <codeExplanation>missing value</codeExplanation>
               </missingValueCode>
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               <attributeName>block</attributeName>
               <attributeDefinition>topography of the study site</attributeDefinition>
               <measurementScale>
                  <nominal>
                     <nonNumericDomain>
                        <enumeratedDomain>
                           <codeDefinition>
                              <code>valley</code>
                              <definition>valley</definition>
                           </codeDefinition>
                           <codeDefinition>
                              <code>ridge</code>
                              <definition>ridge</definition>
                           </codeDefinition>
                        </enumeratedDomain>
                     </nonNumericDomain>
                  </nominal>
               </measurementScale>
               <missingValueCode>
                  <code>NA</code>
                  <codeExplanation>missing value</codeExplanation>
               </missingValueCode>
            </attribute>
            <attribute id="1457966074126">
               <attributeName>treatment</attributeName>
               <attributeDefinition>type of experimental treatment applied in the hemlock removal
      experiment</attributeDefinition>
               <measurementScale>
                  <nominal>
                     <nonNumericDomain>
                        <enumeratedDomain>
                           <codeDefinition>
                              <code>Girdled</code>
                              <definition>girdled</definition>
                           </codeDefinition>
                           <codeDefinition>
                              <code>Logged</code>
                              <definition>logged</definition>
                           </codeDefinition>
                           <codeDefinition>
                              <code>Hardwood Control</code>
                              <definition>hardwood control</definition>
                           </codeDefinition>
                           <codeDefinition>
                              <code>Hemlock Control</code>
                              <definition>hemlock control</definition>
                           </codeDefinition>
                        </enumeratedDomain>
                     </nonNumericDomain>
                  </nominal>
               </measurementScale>
               <missingValueCode>
                  <code>NA</code>
                  <codeExplanation>missing value</codeExplanation>
               </missingValueCode>
            </attribute>
            <attribute id="1457966074127">
               <attributeName>plot</attributeName>
               <attributeDefinition>plot number [1-8]. Each plot is 90m×90m (0.81 ha).</attributeDefinition>
               <measurementScale>
                  <nominal>
                     <nonNumericDomain>
                        <textDomain>
                           <definition>plot number [1-8]. Each plot is 90m×90m (0.81 ha).</definition>
                        </textDomain>
                     </nonNumericDomain>
                  </nominal>
               </measurementScale>
               <missingValueCode>
                  <code>NA</code>
                  <codeExplanation>missing value</codeExplanation>
               </missingValueCode>
            </attribute>
            <attribute id="1457966074128">
               <attributeName>transect</attributeName>
               <attributeDefinition>transect number in which data was collected [ 1- 2]. In each plot there
      are two 60m×1m transects.</attributeDefinition>
               <measurementScale>
                  <nominal>
                     <nonNumericDomain>
                        <textDomain>
                           <definition>transect number in which data was collected [ 1- 2]. In each plot there are two
          60m×1m transects.</definition>
                        </textDomain>
                     </nonNumericDomain>
                  </nominal>
               </measurementScale>
               <missingValueCode>
                  <code>NA</code>
                  <codeExplanation>missing value</codeExplanation>
               </missingValueCode>
            </attribute>
            <attribute id="1457966074129">
               <attributeName>location</attributeName>
               <attributeDefinition>area within each transect 15m×1m in which red efts were searched for.
      There are 4 areas/transect.</attributeDefinition>
               <measurementScale>
                  <nominal>
                     <nonNumericDomain>
                        <textDomain>
                           <definition>area within each transect 15m×1m in which red efts were searched for. There are
          4 areas/transect.</definition>
                        </textDomain>
                     </nonNumericDomain>
                  </nominal>
               </measurementScale>
               <missingValueCode>
                  <code>NA</code>
                  <codeExplanation>missing value</codeExplanation>
               </missingValueCode>
            </attribute>
            <attribute id="1457966074130">
               <attributeName>sample.n</attributeName>
               <attributeDefinition>sampling occasion [1-5]</attributeDefinition>
               <measurementScale>
                  <nominal>
                     <nonNumericDomain>
                        <textDomain>
                           <definition>sampling occasion [1-5]</definition>
                        </textDomain>
                     </nonNumericDomain>
                  </nominal>
               </measurementScale>
               <missingValueCode>
                  <code>NA</code>
                  <codeExplanation>missing value</codeExplanation>
               </missingValueCode>
            </attribute>
            <attribute id="1457966074131">
               <attributeName>count</attributeName>
               <attributeDefinition>number of efts observed at each 15m×1m box in each transect on specific
      date</attributeDefinition>
               <measurementScale>
                  <nominal>
                     <nonNumericDomain>
                        <textDomain>
                           <definition>number of efts observed at each 15m×1m box in each transect on specific
          date</definition>
                        </textDomain>
                     </nonNumericDomain>
                  </nominal>
               </measurementScale>
               <missingValueCode>
                  <code>NA</code>
                  <codeExplanation>missing value</codeExplanation>
               </missingValueCode>
            </attribute>
            <attribute id="1457966074132">
               <attributeName>rh</attributeName>
               <attributeDefinition>relative humidity at sampling date</attributeDefinition>
               <measurementScale>
                  <nominal>
                     <nonNumericDomain>
                        <textDomain>
                           <definition>relative humidity at sampling date</definition>
                        </textDomain>
                     </nonNumericDomain>
                  </nominal>
               </measurementScale>
               <missingValueCode>
                  <code>NA</code>
                  <codeExplanation>missing value</codeExplanation>
               </missingValueCode>
            </attribute>
         </attributeList>
         <numberOfRecords>320</numberOfRecords>
      </dataTable>
   </dataset>
   <additionalMetadata>
      <metadata>
         <additionalClassifications>
            <researchTopic>biodiversity</researchTopic>
            <researchTopic>conservation</researchTopic>
            <researchTopic>community</researchTopic>
            <studyType>short-term measurement</studyType>
         </additionalClassifications>
      </metadata>
   </additionalMetadata>
   <additionalMetadata>
      <metadata>
         <additionalLinks>
            <url name="Salamander Abundance at Harvard Forest 2003-2004">https://harvardforest.fas.harvard.edu/exist/apps/datasets/showData.html?id=hf075</url>
         </additionalLinks>
      </metadata>
   </additionalMetadata>
</eml:eml>
