Search by Author
Ellison
- Acosta, J., Vallejos, R., Ellison, A. M., Osorio, F., de Castro, M. 2024. Comparing two spatial variables with the probability of agreement. Biometrics 80: ujae009.
- Albani, M., Moorcroft, P. R., Ellison, A. M., Orwig, D. A., Foster, D. R. 2010. Predicting the impact of hemlock Woolly Adelgid on carbon dynamics of eastern United States forests. Canadian Journal Forest Research 40: 119-133.
- Atwater*, D. Z., Butler, J. L., Ellison, A. M. 2006. Spatial distribution and impacts of moth herbivory on northern pitcher plants. Northeastern Naturalist 13: 43-56.
- Baiser, B., Adreshiri*, R., Ellison, A. M. 2011. Species richness and trophic diversity increase decomposition in a co-evolved food web. PLoS ONE 6: e20672.
- Baiser, B., Buckley, H. L., Gotelli, N. J., Ellison, A. M. 2013. Predicting food-web structure with metacommunity models. Oikos 112: 492-406.
- Baiser, B., Gotelli, N. J., Buckley, H. L., Miller, T. E., Ellison, A. M. 2011. Geographic variation in network structure of a Nearctic aquatic food web. Global Ecology and Biogeography 21: 579-581.
- Baiser, B., Whitaker, N., Ellison, A. M. 2013. Modeling foundation species in food webs. Ecosphere 4: 1-14.
- Barker Plotkin, A., Orwig, D. A., MacLean, M. G., Ellison, A. M. 2024. Logging response alters trajectories of reorganization after loss of a foundation tree species. Ecological Applications 34: e2957.
- Bennett, K. F., Ellison, A. M. 2009. Nectar, not colour, may lure insects to their death. Biology Letters 5: 469-472.
- Berberich, G. M., Berberich, M. B., Ellison, A. M., Grumpe, A., Wöhler, C. 2019. First In Situ Identification of Ultradian and Infradian Rhythms, and Nocturnal Locomotion Activities of Four Colonies of Red Wood Ants (Formica rufa-Group). Journal of Biological Rhythms 34: 19-38.
- Berberich, G. M., Berberich, M. B., Ellison, A. M., Wöhler, C. 2018. Degassing Rhythms and Fluctuations of Geogenic Gases in A Red Wood-Ant Nest and in Soil in The Neuwied Basin (East Eifel Volcanic Field, Germany). Insects 9: 135-159.
- Berberich, G. M., Dormann, C. F., Klimetzek, D., Berberich, M. B., Sanders, N. J., Ellison, A. M. 2016. Detection probabilities for sessile organisms. Ecosphere 7: e01546.
- Berberich, G. M., Ellison, A. M., Berberich, M. B., Grumpe, A., Becker, A., Wöhler, C. 2018. Can a Red Wood-Ant Nest Be Associated with Fault-Related CH4 Micro-Seepage? A Case Study from Continuous Short-Term In-Situ Sampling. Animals 8: 46-64.
- Bestelmeyer, B. T., Ellison, A. M., Fraser, W. R., Gorman, K. B., Holbrook, S. J., Laney, C. M., Ohman, M. D., Peters, D. P. C., Pillsbury, F. C., Rassweiler, A., Schmitt, R. J., Sharma, S. 2011. Analysis of abrupt transitions in ecological systems. Ecosphere 2: 129.
- Bittleston, L. S., Pierce, N. E., Ellison, A. M., Pringle, A. 2016. Convergence in Multispecies Interactions. Trends in Ecology and Evolution 31: 269-280.
- Bledzki, L. A., Bubier, J. L., Ellison, A. M., Moore, T. R. 2018. Ecology of rotifers and their unappreciated source of nitrogen and phosphorus in temperate northeastern American bogs. Fundamental and Applied Limnology 191: 277-287.
- Bledzki, L. A., Ellison, A. M. 2003. Diversity of rotifers from northeastern USA bogs with new species records for North America and New England. Hydrobiologica 497: 53-62.
- Boose, E. R., Ellison, A. M., Osterweil, L. J., Podorozhny, R., Clarke, L., Wise, A., Hadley, J. L., Foster, D. R. 2007. Data provenance and reliability in sensor networks. Proceedings of Conference on Coastal Environmental Sensing Networks. Boston, MA.
- Boose, E. R., Ellison, A. M., Osterweil, L. J., Podorozhny, R., Clarke, L., Wise, A., Hadley, J. L., Foster, D. R. 2007. Ensuring Reliable Datasets for Environmental Models and Forecasts. Ecological Informatics 2: 237-247.
- Boose, E. R., Lerner, B. S. 2017. Replication of data analyses: provenance in R. In: Shavit, A., Ellison, A. M., Stepping in the Same River Twice: Replication in Biological Research, Yale University Press, New Haven.
- Borden, D. B., Ellison, A. M. 2019. The university campus as a space for public art: a view through Warming Warning. Boston Art Review 4: 110-115.
- Buckley, H. L., Case, B. S., Ellison, A. M. 2016. Using codispersion analysis to characterize spatial patterns in species co-occurrences. Ecology 96: 32-39.
- Buckley, H. L., Case, B. S., Zimmerman, J. K., Thompson, J., Myers, J. A., Ellison, A. M. 2016. Using codispersion analysis to quantify and understand spatial patterns in species–environment relationships. New Phytologist 211: 735–749.
- Buckley, H. L., Miller, T. E., Ellison, A. M., Gotelli, N. J. 2003. Reverse latitudinal trends in species richness of pitcher-plant food webs. Ecology Letters 6: 825-829.
- Buckley, H. L., Miller, T. E., Ellison, A. M., Gotelli, N. J. 2010. Local to continental-scale variation in the richness and composition of an aquatic food web. Global Ecology and Biogeography 19: 711-723.
- Butler*, J., Atwater*, D. Z., Ellison, A. M. 2005. Red-spotted Newts: An Unusual Nutrient Source for Northern Pitcher Plants. Northeastern Naturalist 12: 1-10.
- Butler, J. L., Ellison, A. M. 2007. Nitrogen cycling dynamics in the carnivorous northern pitcher plant, Sarracenia purpurea. Functional Ecology 21: 835-843.
- Butler, J. L., Gotelli, N. J., Ellison, A. M. 2008. Linking the Brown and Green: Nutrient Transformation and Fate in the Sarracenia Microecosystem. Ecology 89: 898-907.
- Case, B. S., Buckley, H. L., Barker Plotkin, A., Ellison, A. M. 2016. Using codispersion analysis to quantify temporal changes in the spatial pattern of forest stand structure. Chilean Journal of Statistics 7: 3-15.
- Case, B. S., Buckley, H. L., Barker Plotkin, A., Orwig, D. A., Ellison, A. M. 2017. When a foundation crumbles: forecasting forest dynamics following the decline of the foundation species Tsuga canadensis. Ecosphere 8: e01893.
- Chao, A., Gotelli, N. J., Hsieh, T. C., Snader, E. L., Ma, K. H., Colwell, R. K., Ellison, A. M. 2014. Rarefaction and extrapolation with Hill numbers: a framework for sampling and estimation in species diversity studies. Ecological Monographs 84: 45-67.
- Chen, Y., Ellison, A. M., Lu, Y. 2018. Establish a special conservation zone for the captive giant panda. Ecosystem Health and Sustainability 4: 29-33.
- Chen, Y., Liu, Q., Ma, Q., Maltby, L., Ellison, A. M., Zhao, Y. 2018. Environmental toxicants impair liver and kidney function and sperm quality of captive pandas. Ecotoxicology and Environmental Safety 162: 218-224.
- Chen, Y., Maltby, L., Liu, Q., Song, Y., Zhen, Y., Ellison, A. M., Ma, Q., Wu, X. 2016. Captive pandas are at risk from environmental toxins. Frontiers in Ecology and the Environment 14: 363-367.
- Chen, Y., Zheng, Y., Liu, Q., Ellison, A. M., Zhao, Y., Ma, Q. 2017. PBDEs (polybrominated diphenyl ethers) pose a risk to captive giant pandas. Environmental Pollution 226: 174-181.
- Chen, Y., Zheng, Y., Liu, Q., Song, Y., An, Z., Ma, Q., Ellison, A. M. 2017. Atmospheric deposition exposes Qinling pandas to toxic pollutants. Ecological Applications 27: 343-348.
- Contamin, R., Ellison, A. M. 2009. Indicators of regime shifts in ecological systems: what do we need to know and when do we need to know it?. Ecological Applications 19: 799-816.
- Dakos, V., Carpenter, S. R., Brock, W. A., Ellison, A. M., Guttal, V., Ives, A. R., Kefi, S., Livina, V., Seekell, D. A., van Nes, E. H., Scheffer, M. 2012. Methods for detecting early warnings of critical transitions in time series illustrated using simulated ecological data. PLoS ONE 7: e41010.
- Daru, B. H., Park, D. S., Primack, R. B., Willis, C. G., Barrington, D. S., Whitfeld, T. J. S., Seidler, R. G., Sweeney, P. W., Foster, D. R., Ellison, A. M., Davis, C. C. 2017. Widespread sampling biases in herbaria revealed from large-scale digitization. New Phytologist 217: 939-955.
- Davis, C. C., Champ, J., Park, D. S., Breckheimer, I., Lyra, G. M., Xie, J., Joly, A., Tarapore, D., Ellison, A. M., Bonnet, Pierre 2020. A New Method for Counting Reproductive Structures in Digitized Herbarium Specimens Using Mask R-CNN. Frontiers in Plant Science 11: article 1129, 13 pp.
- Davis, C. C., Ellison, A. M. 2018. The Brave New World of the Digital Herbarium. ReVista 18: 8-11.
- Davis, C. C., Lyra, G. M., Park, D. S., Asprino, R., Maruyama, R., Torquato, D., Cook, B. I., Ellison, A. M. 2022. New directions in tropical phenology. Trends in Ecology & Evolution 37: 683-693.
- Davis, C. C., Willis, C. G., Connolly, B., Kelly, C., Ellison, A. M. 2015. Herbarium records are reliable sources of phenological change driven by climate and provide novel insights into species’ phenological cueing mechanisms. American Journal of Botany 102: 1599-1609.
- Del Toro, I., Berberich, G. M., Ribbons, R. R., Berberich, M. B., Sanders, N. J., Ellison, A. M. 2017. Nests of red wood ants (Formica rufa-group) are positively associated with tectonic faults: a double-blind test. PeerJ 5:e3903: 8 pp.
- Del Toro, I., Ribbons, R. R., Ellison, A. M. 2015. Ant-mediated ecosystem functions on a warmer planet: effects on soil movement, decomposition and nutrient cycling. Journal of Animal Ecology 84: 1233-1241.
- Del Toro, I., Silva, R. R., Ellison, A. M. 2015. Predicted impacts of climatic change on ant functional diversity and distributions in eastern North American forests. Diversity and Distributions 21: 781-791.
- Diamond, S. E., Chick, L., Penick, C. A., Nichols, L. M., Helms Cahan, S., Dunn, R. R., Ellison, A. M., Sanders, N. J., Gotelli, N. J. 2017. Heat tolerance predicts the importance of species interaction effects as the climate changes. Integrative and Comparative Biology 57: 112-120.
- Diamond, S. E., Nichols, L. M., McCoy, N., Hirsch, C., Pelini, S. L., Sanders, N. J., Ellison, A. M., Gotelli, N. J., Dunn, R. R. 2012. A physiological trait-based approach to predicting the responses of species to experimental climate warming. Ecology 93: 2305-2312.
- Diamond, S. E., Nichols, L. M., Pelini, S. L., Penick, C. A., Barber, G. W., Helms Cahan, S., Dunn, R. R., Ellison, A. M., Sanders, N. J., Gotelli, N. J. 2016. Climatic warming destabilizes forest ant communities. Science Advances 2: e1600842.
- Diamond, S. E., Penick, C. A., Pelini, S. L., Ellison, A. M., Gotelli, N. J., Sanders, N. J., Dunn, R. R. 2013. Using Physiology to Predict the Responses of Ants to Climatic Warming. Integrative and Comparative Biology 53: 965-974.
- Dixon, P. M., Ellison, A. M., Gotelli, N. J. 2005. Improving the precision of estimates of the frequency of rare events. Ecology 86: 1114-1123.
- Dorazio, R. M., Gotelli, N. J., Ellison, A. M. 2011. Modern methods of estimating biodiversity from presence-absence surveys. In: Venora, G., Grillo, O., Lopez-Pujol, J., Biodiversity loss in a changing planet, InTech - Open Access Publisher, Croatia.
- Drummond, F. A., Ellison, A. M., Groden, E., Ouellette, G. D. 2012. Biodiversity of the Schoodic Peninsula: results of the insect and arachnid bioblitzes at the Schoodic District of Acadia National Park, Maine. Maine Agricultural and Forest Experiment Station Technical Bulletin No. 206.
- Dunn, R. R., Agosti, D., Andersen, A. N., Arnan, X., Bruehl, C., Cerda, X., Ellison, A. M., Fisher, B. L., Fitzpatrick, M. C., Gibb, H., Gotelli, N. J., Gove, A. D., Guenard, B., Janda, M., Kaspari, M., Laurent, E. J., Lessard, J., Longino, J. T., Majer, J., Menke, S. B., McGlynn, T. P., Parr, C. L., Philpott, S. M., Pfeiffer, M., Retana, J., Suarez, A. V., Vasconcelos, H. L., Weiser, M. D., Sanders, N. J. 2009. Climatic drivers of hemispheric asymmetry in global patterns of ant species richness. Ecology Letters 12: 324-333.
- Dunn, R. R., Sanders, N. J., Fitzpatrick, M. C., Laurent, E., Lessard, J., Agosti, D., Anderson, A. N., Bruhl, Carsten, Cerda, X., Ellison, A. M., Fisher, B. L., Gibb, H., Gotelli, N. J., Gove, A., Guenard, B., Janda, M., Kaspari, M., Longino, J. T., Majer, J., McGlynn, T. P., Menke, S. B., Parr, C. L., Philpott, S. M., Pfeiffer, M., Retana, J., Suarez, A. V., Vasconcelos, H. L. 2007. Global ant biodiversity and biogeography - a new database and its possibilities. Myrmecological News 10: 77-83.
- Ellison, A. M. 2001. Interspecific and intraspecific variation in seed size and germination requirements of Sarracenia (Sarraceniaceae). American Journal of Botany 88: 429-437.
- Ellison, A. M. 2004. Bayesian inference in ecology. Ecology Letters 7: 509-520.
- Ellison, A. M. 2004. Commentary on statistics and the scientific method in ecology by Brian Dennis. In: Taper, M. L., Lele, S. R., The Nature of Scientific Evidence, University of Chicago Press, Chicago, Illinois, USA.
- Ellison, A. M. 2004. Wetlands of Central America. Wetlands Ecology and Management 12: 3-55.
- Ellison, A. M. 2005. Turning the tables: plants bite back. Wings 28: 25-30.
- Ellison, A. M. 2006. Nutrient Limitation and Stoichiometry of Carnivorous Plant. Plant Biology 8: 740-747.
- Ellison, A. M. 2007. Metabolic theory and patterns of species richness. Ecology 88: 1889.
- Ellison, A. M. 2008. Managing mangroves with benthic biodiversity in mind: Moving beyond roving banditry. Journal of Sea Research 59: 2-15.
- Ellison, A. M. 2008. Preface to a special issue of Aquatic Botany on Mangrove ecology - applications in forestry and coastal zone management. Aquatic Botany 89: 77.
- Ellison, A. M. 2010. Partitioning diversity. Ecology 91: 1962-1963.
- Ellison, A. M. 2010. Repeatability and transparency in ecological research. Ecology 91: 2536-2539.
- Ellison, A. M. 2012. Out of Oz: opportunities and challenges for using ants (Hymenoptera: Formicidae) as biological indicators in north-temperate cold biomes. Myrmecological News 17: 105-119.
- Ellison, A. M. 2012. The Ants of Nantucket: Unexpectedly High Biodiversity in an Anthropogenic Landscape. Northeastern Naturalist 19: 43-66.
- Ellison, A. M. 2013. The Suffocating Embrace of Landscape and the Picturesque Conditioning of Ecology. Landscape Journal 32: 79-94.
- Ellison, A. M. 2014. Experiments are revealing a foundation species: a case-study of eastern hemlock (Tsuga Canadensis). Advances in Ecology 2014: article456904, 12 pp.
- Ellison, A. M. 2014. Preserving the picturesque: perceptions of landscape, landscape art, and land protection in the United States and China. Land 3: 260-281.
- Ellison, A. M. 2014. They Really do Eat Insects: Learning from Charles Darwin's Experiments with Carnivorous Plants. In: Roth, W-M., Verschaffel, L., Darwin-Inspired Learning, Sense Publishers, Rotterdam, Netherlands.
- Ellison, A. M. 2016. World View: It's time to get real about conservation. Nature 538: 141.
- Ellison, A. M. 2017. Best practices for creating replicable research. In: Shavit, A., Ellison, A. M., Stepping in the Same River Twice: Replication in Biological Research, Yale University Press, New Haven.
- Ellison, A. M. 2017. Best practices for creating replicable research. In: Shavit, A., Ellison, A. M., Stepping in the Same River Twice: Replication in Biological Research, Yale University Press, New Haven.
- Ellison, A. M. 2017. Contingent repeatability of experiments in time and space. In: Shavit, A., Ellison, A. M., Stepping in the Same River Twice: Replication in Biological Research, Yale University Press, New Haven.
- Ellison, A. M. 2017. Contingent repeatability of experiments in time and space. In: Shavit, A., Ellison, A. M., Stepping in the Same River Twice: Replication in Biological Research, Yale University Press, New Haven.
- Ellison, A. M. 2018. A Sense of Scale. Bulletin of the Ecological Society of America 9: 173-199.
- Ellison, A. M. 2019. Foundation species, non-trophic interactions, and the value of being common. iScience 13: 254-268.
- Ellison, A. M. 2019. Tsuga canadensis (Eastern Hemlock). In: Armstrong, J., Lakind, A., becoming-Botanical: a post modern liber herbalis, Objet-a Creative Studio, Glasgow.
- Ellison, A. M. 2020. Foraging modes of carnivorous plants. Israel Journal of Ecology and Evolution 66: 101-112.
- Ellison, A. M., Adamec, L. 2011. Ecophysiological traits of terrestrial and aquatic carnivorous plants: are the costs and benefits the same?. Oikos 120: 1721-1731.
- Ellison, A. M., Adamec, L. 2018. Introduction: what is a carnivorous plant? . In: Ellison, A. M., Adamec, L., Carnivorous Plants: Physiology, Ecology, and Evolution, Oxford University Press, Oxford, UK.
- Ellison, A. M., Adamec, L. 2018. Introduction: what is a carnivorous plant? . In: Ellison, A. M., Adamec, L., Carnivorous Plants: Physiology, Ecology, and Evolution, Oxford University Press, Oxford, UK.
- Ellison, A. M., Adamec, L. 2018. The future of research with carnivorous plants. In: Ellison, A. M., Adamec, L., Carnivorous Plants: Physiology, Ecology, and Evolution, Oxford University Press, Oxford, UK.
- Ellison, A. M., Adamec, L. 2018. The future of research with carnivorous plants. In: Ellison, A. M., Adamec, L., Carnivorous Plants: Physiology, Ecology, and Evolution, Oxford University Press, Oxford, UK.
- Ellison, A. M., Agrawal, A. A. 2005. The Statistics of Rarity - A collection of eight articles. Ecology - Special Feature 86: 1079-1163.
- Ellison, A. M., Bank, M. S., Clinton, B. D., Colburn, E. A., Elliott, K., Ford, C. R., Foster, D. R., Kloeppel, B. D., Knoepp, J. D., Lovett, G. M., Mohan, J., Orwig, D. A., Rodenhouse, N. L., Sobczak, W. V., Stinson, K. A., Stone, J. K., Swan, C. M., Thompson, J., Von Holle, B., Webster, J. R. 2005. Loss of foundation species: consequences for the structure and dynamics of forested ecosystems. Frontiers in Ecology and the Environment 3: 479-486.
- Ellison, A. M., Barker Plotkin, A., Foster, D. R., Orwig, D. A. 2010. Experimentally testing the role of foundation species in forests: the Harvard Forest Hemlock Removal Experiment. Methods in Ecology and Evolution 1: 168-179.
- Ellison, A. M., Barker Plotkin, A., Khalid, S. 2016. Foundation Species Loss and Biodiversity of the Herbaceous Layer in New England Forests. Forests 7: article9.
- Ellison, A. M., Barker Plotkin, A., Patel, M. V., Record, S. 2021. Broadening the ecological mindset. Ecological Applications 31: e02347, 3 pp.
- Ellison, A. M., Boose, E. R., Lerner, B. S., Fong, E., Seltzer, M. 2020. The End-to-End Provenance Project. Patterns 1: article 100016, 4 pp.
- Ellison, A. M., Borden, D. B. 2018. Learning from art: Hemlock Hospice inspires new ways of doing science. SciArt Magazine 33: n.p..
- Ellison, A. M., Borden, D. B. 2019. Ecological art: aesthetics, communication, provocation, or call to action. The Goose 17: article 3: 15 pp.
- Ellison, A. M., Borden, D. B. 2021. Hemlock Hospice: Landscape ecology, art, and design as science communication. In: Rogers, H. S., Halpern, M. K., Hannah, D., de Ridder-Vignone, K., Routledge Handbook of Art, Science, and Technology Studies, Routledge, London.
- Ellison, A. M., Borden, D. B. 2022. Constructive Friction Creates a Third Space for Art/Science Collaborations. Leonardo 55: 283-288.
- Ellison, A. M., Buckley, H. L., Case, B. S., Cardenas, D., Duque, A. J., Lutz, J. A., Myers, J. A., Orwig, D. A., Zimmerman, J. K. 2019. Species Diversity Associated with Foundation Species in Temperate and Tropical Forests. Forests 10: (128) 35 pp.
- Ellison, A. M., Buckley, H. L., Miller, T. E., Gotelli, N. J. 2004. Morphological variation in Sarracenia purpurea (Sarraceniaceae): geographic, environmental, and taxonomic correlates. American Journal of Botany 91: 1930-1935.
- Ellison, A. M., Butler, E. D., Hicks, E. J., Naczi, R. F. C., Calie, P. J., Bell, C. D., Davis, C. C. 2012. Phylogeny and biogeography of the carnivorous plant family Sarraceniaceae. PLoS ONE 7: e39291.
- Ellison, A. M., Chen*, J., Díaz*, D., Kammerer-Burnham*, C., Lau*, M. 2005. Changes in ant community structure and composition associated with hemlock decline in New England. Proceedings of Third Symposium on Hemlock Woolly Adelgid in the Eastern United States. Morgantown, West Virginia.
- Ellison, A. M., Davis, C. C., Calie, P. J., Naczi, R. F. C. 2014. Pitcher Plants (Sarracenia) Provide a 21st-Century Perspective on Infraspecific Ranks and Interspecific Hybrids: A Modest Proposal for Appropriate Recognition and Usage. Systematic Botany 39: 939-949.
- Ellison, A. M., Degrassi, A. L. 2017. All species are important, but some species are more important than others. Journal of Vegetation Science 28: 669-671.
- Ellison, A. M., Dennis, B. 2010. Paths to statistical fluency for ecologists. Frontiers in Ecology and the Environment 8: 362-370.
- Ellison, A. M., Farnsworth, E. J. 2005. The Cost of Carnivory for Darlingtonia california (Sarracheniaceae): Evidence from Relationships among Leaf Traits. American Journal of Botany 92: 1085-1093.
- Ellison, A. M., Farnsworth, E. J. 2012. Wonderful Woodland Ants. Northern Woodlands 19: 34-40.
- Ellison, A. M., Farnsworth, E. J. 2014. Targeted sampling increases knowledge and improves estimates of ant species richness in Rhode Island. Northeastern Naturalist 21: NENHC13-24.
- Ellison, A. M., Farnsworth, E. J. 2014. The Ants of Massachusetts: Biodiversity Under our Feet. Massachusetts Wildlife 64: 4-19.
- Ellison, A. M., Farnsworth, E. J., Gotelli, N. J. 2002. Ant diversity in pitcher-plant bogs of Massachusetts. Northeastern Naturalist 9: 267-284.
- Ellison, A. M., Felson, A. J., Friess, D. A. 2020. Mangrove Rehabilitation and Restoration as Experimental Adaptive Management. Frontiers in Marine Science 7: Article 327, 19 pp.
- Ellison, A. M., Gilliam, F. S. (eds.) 2019. Causes and Consequences of Species Diversity in Forest Ecosystems. MDPI, Basel.
- Ellison, A. M., Gotelli, N. J. 2002. Nitrogen availability alters the expression of carnivory in the northern pitcher plant, Sarracenia purpurea. Proceedings of the National Academy of Sciences of the United States of America 99: 4409–4412.
- Ellison, A. M., Gotelli, N. J. 2009. Energetics and the evolution of carnivorous plants - Darwin's "most wonderful plants in the world". Journal of Experimental Biology 60: 19-42.
- Ellison, A. M., Gotelli, N. J. 2021. Scaling in Ecology with a Model System. Princeton University Press, Princeton, NJ.
- Ellison, A. M., Gotelli, N. J., Bledzki, L. A., Butler, J. 2021. Regulation by the Pitcher Plant Sarracenia purpurea of the Structure of its Inquiline Food Web. American Midland Naturalist 186: 1-15.
- Ellison, A. M., Gotelli, N. J., Brewer, J. S., Cochran-Stafira, D. L., Kneitel, J. M., Miller, T. E., Worley, A. S., Zamora, R. 2003. The evolutionary ecology of carnivorous plants. Advances in Ecological Research 33: 1-74.
- Ellison, A. M., Gotelli, N. J., Hsiang, N., Lavine, M., Maidman, A. B. 2014. Kernel Intensity Estimation of 2-Dimensional Spatial Poisson Point Processes From k-Tree Sampling. Journal of Agricultural, Biological, and Environmental Statistics 19: 357-372.
- Ellison, A. M., Gotelli, N. J., Inouye, B. D., Strong, D. R. 2014. P values, hypothesis testing, and model selection: it’s déjà vu all over again. Ecology 95: 609-610.
- Ellison, A. M., Lavine, M., Kerson*, P. B., Barker Plotkin, A. A., Orwig, D. A. 2014. Building a foundation: land-use history and dendrochronology reveal temporal dynamics of a Tsuga canadensis (Pinaceae) forest. Rhodora 116: 377-427.
- Ellison, A. M., LeRoy, C. J., Landsbergen, K. J., Bosanquet, E. 2018. Art/Science Collaborations: New Explorations of Ecological Systems, Values, and their Feedbacks. Bulletin of the Ecological Society of America 99: 180-191.
- Ellison, A. M., Orwig, D. A., Barker Plotkin, A. A. 2017. Cut or girdle. In: Foster, D. R., Hemlock: A Forest Giant on the Edge, Yale University Press, New Haven, CT.
- Ellison, A. M., Orwig, D. A., Fitzpatrick, M. C., Preisser, E. L. 2018. The Past, Present, and Future of the Hemlock Woolly Adelgid (Adelges tsugae) and Its Ecological Interactions with Eastern Hemlock (Tsuga canadensis) Forests. Insects 9: 172-189.
- Ellison, A. M., Osterweil, L. J., Hadley, J. L., Wise, A., Boose, E. R., Clarke, L., Foster, D. R., Hanson, A., Jensen, D., Kuzeja, P. S., Riseman, E., Schultz, H. 2006. Analytic Webs Support the Synthesis of Ecological Data Sets. Ecology 87: 1345-1358.
- Ellison, A. M., Parker, J. N. 2002. Seed dispersal and seedling establishment of Sarracenia purpurea (Sarraceniaceae). American Journal of Botany 89: 1024–1026.
- Ellison, A. M., Record, S., Arguello*, A., Gotelli, N. J. 2007. Rapid Inventory of the Ant Assemblage in a Temperate Hardwood Forest: Species Composition and Assessment of Sampling Methods. Environmental Entomology 36: 766-775.
- Ettinger, A. K., Chuine, I., Cook, B. I., Dukes, J. S., Ellison, A. M., Johnston, M. R., Panetta, A. M., Rollinson, C. R., Vitasse, Y., Wolkovich, E. M. 2019. How do climate change experiments alter plot-scale climate?. Ecology Letters 22: 748-763.
- Farnsworth, E. J., Barker Plotkin, A., Ellison, A. M. 2012. The relative contributions of seed bank, seed rain, and understory vegetation dynamics to the reorganization of Tsuga canadensis forests after loss due to logging or simulated attack by Adelges tsugae. Canadian Journal of Forest Research 42: 2090-2105.
- Farnsworth, E. J., Chu, M., Kress, W. J., Neill, A. K., Best, J. H., Stevenson, R. D., Courtney, G. W., Vandyk, J. K., Ellison, A. M. 2013. Next-Generation Field Guides. BioScience 63: 891-899.
- Farnsworth, E. J., Ellison, A. M. 2008. Prey availability directly affects physiology, growth, nutrient allocation and scaling relationships among leaf traits in 10 carnivorous plant species. Journal of Ecology 96: 213-221.
- Farnsworth, E. J., Ellison, A. M., Gotelli, N. J. 2009. EvoSoap. Nature 458: 938.
- Felson, A. J., Ellison, A. M. 2021. Designing (for) Urban Food Webs. Frontiers in Ecology and Evolution 9: article 582041, 26 pp.
- Finzi, A. C., Giasson, M.-A., Barker Plotkin, A., Aber, J. D., Boose, E. R., Davidson, E. A., Dietze, M. C., Ellison, A. M., Frey, S. D., Goldman, E., Keenan, T. F., Melillo, J. M., Munger, J. W., Nadelhoffer, K. J., Ollinger, S. V., Orwig, D. A., Pederson, N., Richardson, A. D., Savage, K., Tang, J., Thompson, J. R., Williams, C. A., Wofsy, S. C., Zhou, Z., Foster, D. R. 2020. Carbon budget of the Harvard Forest Long-Term Ecological Research site: pattern, process, and response to global change. Ecological Monographs 90: e01423, 37 pp.
- Fitzpatrick, M. C., Ellison, A. M. 2018. Estimating the exposure of carnivorous plants to rapid climatic change. In: Ellison, A. M., Adamec, L., Carnivorous Plants: Physiology, Ecology, and Evolution, Oxford University Press, Oxford, UK.
- Fitzpatrick, M. C., Ellison, A. M. 2018. Estimating the exposure of carnivorous plants to rapid climatic change. In: Ellison, A. M., Adamec, L., Carnivorous Plants: Physiology, Ecology, and Evolution, Oxford University Press, Oxford, UK.
- Fitzpatrick, M. C., Gotelli, N. J., Ellison, A. M. 2013. MaxEnt vs. MaxLike: Empirical comparisons with ant species distributions. Ecosphere 4: 1-15.
- Fitzpatrick, M. C., Preisser, E. L., Ellison, A. M., Elkinton, J. S. 2009. Observer bias and the detection of low-density populations. Ecological Applications 19: 1673-1679.
- Fitzpatrick, M. C., Preisser, E. L., Porter, A., Elkinton, J. S., Ellison, A. M. 2012. Modeling range dynamics in heterogeneous landscapes: invasion of the hemlock woolly adelgid in eastern North America. Ecological Applications 22: 472-486.
- Fitzpatrick, M. C., Pressier, E. L., Porter, A., Elkinton, J., Waller, L. A., Carlin, B. P., Ellison, A. M. 2010. Ecological boundary detection using Bayesian areal wombling. Ecology 91: 3448-3455.
- Foster, D. R., Baiser, B., Barker Plotkin, A., D'Amato, A. W., Ellison, A. M., Orwig, D. A., Oswald, W. W., Thompson, J. R. 2014. Hemlock: A Forest Giant on the Edge. Yale University Press, New Haven, CT.
- Foster, D. R., Donahue, B. M., Kittredge, D. B., Lambert, K. F., Hunter, M. L., Hall, B. R., Irland, L. C., Lilieholm, R. J., Orwig, D. A., D'Amato, A. W., Colburn, E. A., Thompson, J. R., Levitt, J. N., Ellison, A. M., Keeton, W. S., Aber, J. D., Cogbill, C. V., Driscoll, C. T., Fahey, T. J., Hart, C. M. 2010. Wildlands and Woodlands: A Vision for the New England Landscape. Harvard Forest Paper No. 31.
- Foster, D. R., Kittredge, D. B., Donahue, B., Motzkin, G., Orwig, D. A., Ellison, A. M., Hall, B., Colburn, E. A., D'Amato, A. 2005. Wildlands and Woodlands: A Vision for the Forests of Massachusetts. Harvard Forest Paper No. 27.
- Foster, D. R., Lambert, K. F., Kittredge, D. B., Donahue, B. M, Hart, C. M., Labich, W. G., Meyer, S., Thompson, J. , Buchanan, M., Levitt, J. N., Pershel, R., Ross, K., Elkins, G., Daigle, C., Hall, B., Faison, E. K., D'Amato, A. W., Forman, R. T. T., Del Tredici, P., Irland, L. C., Colburn, B. A., Orwig, D. A., Aber, J. D., Berger, A., Driscoll, C. T., Keeton, W. S., Lilieholm, R. J., Pederson, N., Ellison, A. M., Hunter, M. L., Fahey, T. J. 2017. Wildlands and Woodlands, Farmlands and Communities: Broadening the Vision for New England. Harvard Forest Paper No. 33.
- Giasson, M.-A., Ellison, A. M., Bowden, R. D., Crill, P. M., Davidson, E. A., Drake, J. E., Frey, S. D., Hadley, J. L., Lavine, M., Melillo, J. M., Munger, J. W., Nadelhoffer, K. J., Nicoll, L., Ollinger, S. V., Savage, K., Steudler, P. A., Tang, J., Varner, R. K., Wofsy, S. C., Foster, D. R., Finzi, A. C. 2013. Soil respiration in a northeastern US temperate forest: a 22-year synthesis. Ecosphere 4: article 140.
- Gibb, H., Dunn, R. R., Sanders, N. J., Grossman, B. F., Photakis, M., Abril, S., Agosti, D., Andersen, A. N., Angulo, E., Armbrecht, I., Arnan, X., Baccaro, F. B., Bishop, T. R., Boulay, R., Bruhl, C. A., Castracani, C., Cerda, X., Del Toro, I., Delsinne, T., Diaz, M., Donoso, D. A., Ellison, A. M., Enriquez, M. L., Fayle, T. M., Feener Jr., D. H., Fisher, B. L., Fisher, R. N., Fitzpatrick, M. C., Gomez, C., Gotelli, N. J., Heterick, B., Hoffmann, B., Janda, M., Jenkins, C. N., Kaspari, M., Klimes, P., Lach, L., Laeger, T., Lattke, J. E., Leponce, M., Lessard, J.-P., Longino, J. T., Lucky, A., Luke, S. H., Majer, J., McGlynn, T. P., Pacheco, R., Paknia, O., Pearce-Duvet, J., Pfeiffer, M., Philpott, S. M., Renasco, J., Retana, J., Silva, R. R., Sorger, M. D., Souza, J., Suarez, A., Tista, M., Vasconcelos, H. L., Vonshak, M., Weiser, M. D., Yates, M., Parr, C. L. 2017. A global database of ant species abundances. Ecology 98: 883-884.
- Gotelli, N. J., Dorazio, R. M., Ellison, A. M., Grossman, G. D. 2010. Detecting temporal trends in species assemblages with bootstrapping procedures and hierarchical models. Philosophical Transactions of the Royal Society B: Biological Sciences Series B: 3621-3631.
- Gotelli, N. J., Ellison, A. M. 2002. Assembly rules for New England ant assemblages. Oikos 99: 591-599.
- Gotelli, N. J., Ellison, A. M. 2002. Biogeography at a Regional Scale: Determinants of Ant Species Density in New England Bogs and Forests. Ecology 83: 1604-1609.
- Gotelli, N. J., Ellison, A. M. 2002. Nitrogen deposition and extinction risk in the northern pitcher plant Sarracenia purpurea. Ecology 83: 2758-2765.
- Gotelli, N. J., Ellison, A. M. 2004. A Primer of Ecological Statistics. Sinauer Associates, Sunderland, Massachusetts, USA.
- Gotelli, N. J., Ellison, A. M. 2006. Food-web models predict species abundances in response to habitat change. PLoS Biology 14: e324.
- Gotelli, N. J., Ellison, A. M. 2006. Forecasting extinction risk with non-stationary matrix models. Ecological Applications 16: 51-61.
- Gotelli, N. J., Ellison, A. M., Ballif, B. A. 2012. Environmental proteomics, biodiversity statistics and food web structure. Trends in Ecology and Evolution 27: 436-442.
- Gotelli, N. J., Ellison, A. M., Dunn, R. R., Sanders, N. J. 2011. Counting ants (Hymenoptera: Formicidae): biodiversity sampling and statistical analysis for myrmecologists. Myrmecological News 15: 13-19.
- Gotelli, N. J., Mouser, P. J., Hudman, S., Morales, S. E., Ross, D., Ellison, A. M. 2008. Geographic variation in nutrient availability, stoichiometry, and metal concentrations of plants in ombrotrophic bogs in New England, USA. Wetlands 28: 827-84.
- Gotelli, N. J., Smith, A. M., Ellison, A. M., Ballif, B. A. 2011. Proteomic characterization of the major arthropod associates of the carnivorous pitcher plant Sarracenia purpurea. Proteomics 11: 2354-2358.
- Jenkins, C. N., Sanders, N. J., Andersen, A. N., Arnan, X., Bruhl, C. A., Cerda, X., Ellison, A. M., Fish, B. L., Fitzpatrick, M. C., Gotelli, N. J., Gove, A. D., Guenard, B., Lattke, J. E., Lessard, J., McGlynn, T. P., Menke, S. B., Parr, C. L., Philpott, S. M., Vasconcelos, H. L., Weiser, M. D., Dunn, R. R. 2011. Global diversity in light of climate change: the case of ants. Diversity and Distributions 17: 652-662.
- Juice, S. M., Templer, P. H., Phillips, N. G., Ellison, A. M., Pelini, S. L. 2016. Ecosystem warming increases sap flow rates of northern red oak trees. Ecosphere 7: e01221.
- Jules, E. S., Ellison, A. M., Gotelli, N. J., Lillie, S., Meindl, G. A., Sanders, N. J., Young, A. N. 2011. The influence of fire on a rare serpentine plant assemblage: a five year study of Darlingtonia fens. American Journal of Botany 98: 801-811.
- Karagatzides, J. D., Butler, J. L., Ellison, A. M. 2009. The Pitcher Plant Sarracenia purpurea Can Directly Acquire Organic Nitrogen and Short-Circuit the Inorganic Nitrogen Cycle. PLoS ONE 4: e6164.
- Karagatzides, J. D., Ellison, A. M. 2009. Construction costs, payback times and the leaf economics of carnivorous plants. American Journal of Botany 96: 1612-1619.
- Kefi, S., Guttal, V., Brock, W. A., Carpenter, S. R., Ellison, A. M., Livina, V. N., Seekell, D. A., Scheffer, M., van Nes, E. H., Dakos, V. 2014. Early Warning Signals of Ecological Transitions: Methods for Spatial Patterns. PloS ONE 9: e92097.
- Kendrick, J. A., Ribbons, R. R., Classen, A. T., Ellison, A. M. 2015. Changes in canopy structure and ant assemblages affect soil ecosystem variables as a foundation species declines. Ecosphere 6: article 77.
- Lau, M. K., Ellison, A. M., Nguyen, A., Penick, C. A., DeMarco, B., Gotelli, N. J., Sanders, N. J., Dunn, R. R., Helms Cahan, S. 2019. Draft Aphaenogaster genomes expand our view of ant genome size variation across climate gradients. PeerJ 7:e6447: 19pp.
- Lau, M., Baiser, B., Northrop, A., Gotelli, N. J., Ellison, A. M. 2018. Regime shifts and hysteresis in the pitcher-plant microecosystem. Ecological Modelling 382: 1-8.
- Lerner, B., Boose, E. R., Brand*, O., Ellison, A. M., Fong, E., Lau, M., Ngo*, K., Pasquier, T., Perez*, L. A., Seltzer, M., Sheehan*, R., Wonsil*, J. 2023. Making Provenance Work for You. The R Journal 14: 141-159.
- Lerner, B., Boose, E. R., Osterweil, L. J., Ellison, A. M., Clark, L. A. 2011. Provenance and quality control in sensor networks. Proceedings of the Environmental Information Management Conference (EIM 2011). Santa Barbara, CA.
- Li, X., Liang, E., Gricar, J., Rossi, S., Cufar, K., Ellison, A. M. 2017. Critical minimum temperature limits xylogenesis and maintains treelines on the southeastern Tibetan Plateau. Science Bulletin 62: 804-812.
- Liang, E., Wang, Y., Piao, S., Lu, X., Camarero, J. J., Zhu, H., Zhu, L., Ellison, A. M., Ciais, P., Penuelas, J. 2016. Species interactions slow warming-induced upward shifts of treelines on the Tibetan Plateau. PNAS 113: 4380-4385.
- Lu, X., Liang, E., Camarero, J. J., Ellison, A. M. 2021. An unusually high shrubline on the Tibetan Plateau. Ecology 10.1002/ecy.3310: e03310, 4 pp.
- Lu, Y., Wang, R., Shi, Y., Su, C., Yuan, J., Johnson, A. C., Jenkins, A., Ferrier, R. C., Chen, D., Tian, H., Melillo, J. M., Song, S., Ellison, A. M. 2018. Interaction between pollution and climate change augments ecological risk to a coastal ecosystem. Ecosystem Health and Sustainability 4: 161-168.
- Lustenhouwer, M. N., Nicoll, L., Ellison, A. M. 2012. Microclimatic effects of the loss of a foundation species from New England forests. Ecosphere 3: 26.
- Ma, Z., Ellison, A. M. 2018. A unified concept of dominance applicable at both community and species scales. Ecosphere 9: e02477, 15 pp.
- Ma, Z., Ellison, A. M. 2019. Dominance network analysis provides a new framework for studying the diversity-stability relationship. Ecological Monographs 89: e01358, 21 pp.
- Ma, Z., Ellison, A. M. 2024. Cross-scale scaling-law analyses for the heterogeneity and diversity of animal gut microbiomes from community to landscape. Oikos 2025: e10598.
- McDevitt, A. L., Patel, M. V., Ellison, A. M. 2020. Lessons and recommendations from three decades as an NSF REU site: A call for systems-based assessment. Ecology and Evolution 10: 2710-2738.
- McDevitt, A., Patel, M., Rose, B., Ellison, A. M. 2016. Insights into Student Gains from Undergraduate Research Using Pre- and Post-Assessments. BioScience 66: 1070-1078.
- McNutt, M., Lehnert, K., Hanson, B., Nosek, B. A., Ellison, A. M., King, J. L. 2016. Liberating field science samples and data: Promote reproductibility by moving beyond "available upon request". Science 261: 1024-1026.
- McPeek, M. A., DeAngelis, D. L., Shaw, R. G., Moore, A. J., Rausher, M. D., Strong, D. R., Ellison, A. M., Barrett, L., Rieseberg, L., Breed, M. D., Sullivan, J., Osenberg, C. W., Holyoak, M., Elgar, M. A. 2009. Editorial: The Golden Rule of Reviewing. American Naturalist 173: E155-158.
- Milcu, A., Puga-Freitas, R., Ellison, A. M., Blouin, M., Scheu, S., Freshet, G. T., Rose, L. Barot, S., Cesarz, S., Eisenhauer, N., Girin, T., Assandri, D., Bonkowski, M., Buchmann, N., Butenschoen, O., Devidal, S., Gleixner, G., Gessler, A., Gigon, A., Greiner, A., Grignani, C., Hansart, A., Kayler, Z., Lange, M., Lata, J., Le Galliard, J., Lukac, M., Mannerheim, N., Muller, M. E. H., Pando, A., Rotter, P., Scherer-Lorenzen, M., Seyhun, R., Urban-Mead, K., Weigelt, A., Zavattaro, L., Roy, J. 2018. Genotypic variability enhances the reproducibility of an ecological study. Nature Ecology & Evolution 2: 279-287.
- Ne’eman, G., Ne’eman, R., Ellison, A. M. 2006. Limits to reproductive success of Sarracenia purpurea (Sarraceniaceae). American Journal of Botany 93: 1660-1666.
- Nguyen, A. D., Brown*, M., Zitnay*, J., Cahan, S. H., Gotelli, N. J., Arnett, A., Ellison, A. M. 2019. Trade-Offs in Cold Resistance at the Northern Range Edge of the Common Woodland Ant Aphaenogaster picea (Formicidae). The American Naturalist 194: E151–E163.
- Northrop, A. C., Brooks, R. K., Ellison, A. M., Gotelli, N. J., Ballif, B. A. 2017. Environmental proteomics reveals taxonomic and functional changes in an enriched aquatic ecosystem. Ecosphere 8: e01954: 17 pp.
- Northrup, A. C., Avalone, V., Ellison, A. M., Ballif, B. A., Gotelli, N. J. 2021. Clockwise and counterclockwise hysteresis characterize state changes in the same aquatic ecosystem. Ecology Letters 24: 94-101.
- Orwig, D. A., Aylward, J. A., Buckley, H. L., Case, B. S., Ellison, A. M. 2022. Land-use history impacts spatial patterns and composition of woody plant species across a 35-hectare temperate forest plot. PeerJ 10: e12693, 32 pp.
- Orwig, D. A., Barker Plotkin, A., Davidson, E. A., Lux, H., Savage, K., Ellison, A. M. 2013. Foundation species loss affects vegetation structure more than ecosystemfunction in a northeastern USA forest. PeerJ 1: e41.
- Osterweil, L. J., Clark, L. A., Ellison, A. M., Podorozhny, R., Wise, A., Boose, E. R., Hadley, J. L. 2008. Experience in using a process language to define scientific workflow and generate dataset provenance. Proceedings of The 16th ACM SIGSOFT International Symposium on the Foundations of Software Engineering. Atlanta, GA.
- Osterweil, L. J., Clarke, L., Ellison, A. M., Boose, E. R., Podorozhny, R., Wise, A. 2010. Clear and Precise Specification of Ecological Data Management Processes and Dataset Provenance. IEEE Transactions on Geoscience and Remote Sensing 7: 189-192.
- Osterweil, L. J., Wise, A., Clarke, L., Ellison, A. M., Hadley, J. L., Boose, E. R., Foster, D. R. 2006. Process technology to facilitate the conduct of science. Proceedings of International Software Process Workshop. Beijing, China.
- Oswald, W. W., Doughty, E. D., Ne’eman, G., Ne'eman, R., Ellison, A. M. 2011. Pollen Morphology and Its Relationship to Taxonomy of the Genus Sarracenia (Sarraceniaceae). Rhodora 113: 235-251.
- Park, D. S., Breckheimer, I. K., Ellison, A. M., Lyra, G. M., Davis, C. C. 2022. Phenological displacement is uncommon among sympatric angiosperms. New Phytologist 233: 1466-1478.
- Park, D. S., Breckheimer, I., Williams, A. C., Law, E., Ellison, A. M., Davis, C. C. 2018. Herbarium specimens reveal substantial and unexpected variation in phenological sensitivity across the eastern United States. Philosophical Transactions of the Royal Society of London, Series B 374: 20170394: .
- Park, D. S., Ellison, A. M., Davis, C. C. 2018. Mating system does not predict niche breath. Global Ecology and Biogeography 27: 804-813.
- Pasquier, T., Lau, M. K., Han, X., Fong, E., Lerner, B. S., Boose, E. R., Crosas, M., Ellison, A. M., Seltzer, M. 2018. Sharing and Preserving Computational Analyses for Posterity with encapsulator. Computing in Science and Engineering 20: 111-124.
- Pasquier, T., Lau, M. K., Trisovic, A., Boose, E. R., Couturier, B., Crosas, M., Ellison, A. M., Gibson, V., Jones, C. R., Seltzer, M. 2017. If these data could talk. Scientific Data 4: 170114, 5 pp.
- Pelini, S. L., Boudreau, M., McCoy, N., Ellison, A. M., Gotelli, N. J., Sanders, N. J., Dunn, R. R. 2011. Effects of short-term warming on low and high latitude forest ant communities. Ecosphere 2: art62.
- Pelini, S. L., Bowles, F. P., Ellison, A. M., Gotelli, N. J., Sanders, N. J., Dunn, R. R. 2011. Heating up the forest: open-top chamber warming manipulation of arthropod communities at Harvard and Duke Forests. Methods in Ecology and Evolution 2: 534-540.
- Pelini, S. L., Diamond, S. E., MacLean, H., Ellison, A. M., Gotelli, N. J., Sanders, N. J., Dunn, R. R. 2012. Common garden experiments reveal uncommon responses across temperatures, locations, and species of ants. Ecology and Evolution 2: 3009-3115.
- Pelini, S. L., Diamond, S. E., Nichols, L. M., Stuble, K. L., Ellison, A. M., Sanders, N. J., Dunn, R. R., Gotelli, N. J. 2014. Geographic differences in effects of experimental warming on ant species diversity and community composition. Ecosphere 5: art125.
- Peng, S., Ramirez-Parada, T. H., Mazer, S. J., Record, S., Park, I., Ellison, A. M., Davis, C. C. 2024. Incorporating plant phenological responses into species distribution models reduces estimates of future species loss and turnover. New Phytologist 242: 2338-2352.
- Peterson, C. N., Day*, S., Wolfe, B. E., Ellison, A. M., Kolter, R., Pringle, A. 2008. A keystone predator controls bacterial diversity in the pitcher plant (Sarracenia purpurea) microecosystem. Environmental Microbiology 10: 2257-2266.
- Polidoro, B. A., Carpenter, K. E., Collins, L., Duke, N. C., Ellison, A. M., Ellison, J. C., Farnsworth, E. J., Fernando, E. S., Kathiresan, K., Koedam, N. E., Livingstone, S. R., Miyagi, T., Moore, G. E., Nam, V. N., Ong, J. E., Primavera, J. H., Salmo, S. G., Sanciangco, J. C., Sukardjo, S., Wang, Y., Yong, Y. W. H. 2010. The loss of species: mangrove extinction risk and geographic areas of global concern. PLoS ONE 5: e10095.
- Poppinga, S., Alamsyah, F., Bauer, U., Fleischmann, A., Horstmann, M., Klink, S., Kruppert, S., Lin, Q., Müller, U., Northrop, A., Pachno, B., Prins, A., Scharmann, M., Sirová, D., Westermeier, A., Ellison, A. M. 2018. What's new in the world of carnivorous plants - Summary of two symposia held in July 2017. Carnivorous Plant Newsletter 47: 18-27.
- Qiao, X., Zhang , J., Wang, Z., Xu, Y., Zhou, T., Mi, X., Cao, M., Ye, W., Jin, G., Hao, Z., Wang, X., Wang, X., Tian, S., Li, X., Xiang, W., Liu, Y., Shao, Y., Xu, K., Sang, W., Zeng, F., Ren, H., Jiang, M., Ellison, A. M. 2020. Foundation Species Across a Latitudinal Gradient in China. Ecology 102: e03234, 15 pp.
- Ratchford, J. S., Wittman, S. E., Jules, E. S., Ellison, A. M., Gotelli, N. J., Sanders, N. J. 2005. The effects of fire, local environment, and time on ant assemblages in fens and forests. Diversity and Distributions 11: 487-497.
- Record, S., Charney, N. D., Zakaria, R. M., Ellison, A. M. 2013. Projecting global mangrove species and community distributions under climate change. Ecosphere 4: article34.
- Record, S., Fitzpatrick, M. C., Finley, A. O., Veloz, S., Ellison, A. M. 2013. Should species distribution models account for spatial autocorrelation? A test of model projections across eight millenia of climate change. Global Ecology and Biogeography 22: 760-771.
- Record, S., McCabe*, T., Baiser, B., Ellison, A. M. 2018. Identifying foundation species in North American forests using long-term data on ant assemblage structure. Ecosphere 9(3): article e02139, 20 pp.
- Ren, P., Rossi, S., Camarero, J. J., Piao, S. L., Ellison, A. M., Liang, E., Peñuelas, J. 2018. Critical temperature and precipitation thresholds for the onset of xylogenesis of Juniperus przewalskii in a semi-arid area of the north-eastern Tibetan Plateau. Annals of Botany 121: 617-624.
- Resasco, Julian, Pelini, S. L., Stuble, K. L., Sanders, N. J., Dunn, R. R., Diamond, S. E., Ellison, A. M., Gotelli, N. J., Levey, D. L. 2014. Using Historical and Experimental Data to Reveal Warming Effects on Ant Assemblages. PLoS ONE 9: e88029.
- Sanders, N. J., Gotelli, N. J., Wittman, S. E., Ratchford, R. S., Ellison, A. M., Jules, E. S. 2007. Assembly rules of ground-foraging ant assemblages are contingent on disturbance, habitat and spatial scale. Journal of Biogeography 34: 1632-1641.
- Shavit, A., Ellison, A. M. 2017. Stepping in the Same River Twice: Replication in Biological Research. Yale University Press, New Haven.
- Shavit, A., Ellison, A. M. 2017. Toward a taxonomy of scientific replication. In: Shavit, A., Ellison, A. M., Stepping in the Same River Twice: Replication in Biological Research, Yale University Press, New Haven.
- Shavit, A., Ellison, A. M. 2017. Toward a taxonomy of scientific replication. In: Shavit, A., Ellison, A. M., Stepping in the Same River Twice: Replication in Biological Research, Yale University Press, New Haven.
- Siddig, A. A. H., Ellison, A. M., Ochs*, A., Villar-Leeman*, C., Lau, M. K. 2016. How do ecologists select and use indicator species to monitor ecological change? Insights from 14 years of publication in Ecological Indicators. Ecological Indicators 60: 223-230.
- Siddig, A. A., Ellison, A. M., Jackson, S. 2015. Calibrating abundance indices with population size estimators of red back salamanders (Plethodon cinereus) in a New England forest. PeerJ 3: e952.
- Siddig, A. A., Ellison, A. M., Mathewson, B. G. 2016. Assessing the impacts of the decline of Tsuga canadensis stands on two amphibian species in a New England forest. Ecosphere 7: e01574.
- Siddig, A. A., Ochs*, A., Ellison, A. M. 2019. Do Terrestrial Salamanders Indicate Ecosystem Changes in New England Forests?. Forests 10: 12 pp.
- Sirota*, J., Baiser, B., Gotelli, N. J., Ellison, A. M. 2013. Organic-matter loading determines regime shifts and alternative states in an aquatic ecosystem. PNAS 110: 7742-7747.
- Smart, S. M., Ellison, A. M., Bunce, R. G. H., Marrs, R. H., Kirby, K. J., Kimberley, A., Scott, A. W., Foster, D. R. 2014. Quantifying the impact of an extreme climate event on species diversity in fragmented temperate forests: the effect of the October 1987 storm on British broadleaved woodlands. Journal of Ecology 102: 1273-1287.
- Stanton-Geddes, J., Nguyen, A., Chick, L., Vincent, J., Vangala, M., Dunn, R. A., Ellison, A. M., Sanders, N. J., Gotelli, N. J., Helms Cahan, S. 2016. Thermal reactionomes reveal divergent responses to thermal extremes in warm and cool-climate ant species. BMC Genomics 17: 1-15.
- Sullivan*, K. A., Ellison, A. M. 2006. The seed bank of hemlock forests: implications for forest regeneration following hemlock decline. Journal of the Torrey Botanical Society 3: 393-402.
- Vallejos, R., Buckley, H. Case, B., Acosta, J., Ellison, A. M. 2018. Sensitivity of Codispersion to Noise and Error in Ecological and Environmental Data. Forests 9: 679: 22 pp.
- Vallejos, R., Pérez, J., Ellison, A. M., Richardson, A. D. 2020. A Spatial Concordance Correlation Coefficient with an Application to Image Analysis. Spatial Statistics 40: 100405, 26 pp.
- Vizentin-Bugoni, J., Cordeiro, J., Fontúrbel, Francisco, Ellison, A. M. 2020. A Camera and a Click to Democratize Knowledge. Bulletin of the Ecological Society of America 102: article e01805, 1 p.
- Wakefield, A. E., Gotelli, N. J., Wittman, S. E., Ellison, A. M. 2005. Prey Addition alters Nutrient Stoichiometry of the Carnivorous Plant Sarracenia Purpurea. Ecology 86: 1737-1743.
- Wang, Y., Liang, E., Ellison, A. M., Lu, X., Camarero, J. J. 2015. Facilitation stabilizes moisture-controlled alpine juniper shrublines in the central Tibetan Plateau. Global and Planetary Change 132: 20-30.
- Wang, Y., Pederson, N., Ellison, A. M., Buckley, H. L., Case, B. S., Liang, E., Camarero, J. J. 2016. Increased stem density and competition may diminish the positive effects of warming at alpine treeline. Ecology 97: 1668-1679.
- Weiser, M. D., Sanders, N. J., Agosti, D., Andersen, A. N., Ellison, A. M., Fisher, B. L., Gibb, H., Gotelli, N. J., Gove, A., Gross, K., Guenard, B., Janda, M., Kaspari, M., Lessard, J., Longino, J. T., Majer, J., Menke, S. B., McGlynn, T. P., Parr, C. L., Philpott, S. M., Retana, J., Suarez, A. V., Vasconcelos, H. L., Yanoviak, S. P., Dunn, R. R. 2010. Canopy and litter ant assemblages share similar climate-species density relationships. Biology Letters 6: 769-772.
- Welti, E. A. R., Joern, A., Ellison, A. M., Lightfoot, D. C., Record, S., Rodenhouse, N. L., Stanley, E. H., Kaspari, M. 2021. Studies of insect temporal trends must account for the complex sampling histories inherent to many long-term monitoring efforts. Nature Ecology & Evolution 5: 589–591.
- Wittman, S. E., Sanders, N. J., Ellison, A. M., Jules, E. S., Ratchford, J. S., Gotelli, N. J. 2010. Species interactions and thermal constraints on ant community structure. Oikos 119: 551-559.
- Zeigler, E., Ellison, A. M. 2022. Learning to See Differently. In: Lee, J., Beene, S., Chen, X., Huang, W., Okan, L., Rodrigues, F., Seeing across disciplines: The book of selected readings 2022, International Visual Literacy Association, .
- Zhao, X., Lerner, B. S., Osterweil, L. J., Boose, E. R., Ellison, A. M. 2012. Provenance support for rework. Proceedings of TaPP '12: 4th USENIX Workshop on the Theory and Practice of Provenance. Cambridge, MA.