- Barker Plotkin, A., Orwig, D. A., MacLean, M. G., Ellison, A. M. 2024. Logging response alters trajectories of reorganization after loss of a foundation tree species. Ecological Applications 34: e2957.
- Case, B. S., Buckley, H. L., Barker Plotkin, A., Orwig, D. A., Ellison, A. M. 2017. When a foundation crumbles: forecasting forest dynamics following the decline of the foundation species Tsuga canadensis. Ecosphere 8: e01893.
- Ellison, A. M. 2014. Experiments are revealing a foundation species: a case-study of eastern hemlock (Tsuga Canadensis). Advances in Ecology 2014: article456904, 12 pp.
- Ellison, A. M., Bank, M. S., Clinton, B. D., Colburn, E. A., Elliott, K., Ford, C. R., Foster, D. R., Kloeppel, B. D., Knoepp, J. D., Lovett, G. M., Mohan, J., Orwig, D. A., Rodenhouse, N. L., Sobczak, W. V., Stinson, K. A., Stone, J. K., Swan, C. M., Thompson, J., Von Holle, B., Webster, J. R. 2005. Loss of foundation species: consequences for the structure and dynamics of forested ecosystems. Frontiers in Ecology and the Environment 3: 479-486.
- Ellison, A. M., Barker Plotkin, A., Foster, D. R., Orwig, D. A. 2010. Experimentally testing the role of foundation species in forests: the Harvard Forest Hemlock Removal Experiment. Methods in Ecology and Evolution 1: 168-179.
- Ellison, A. M., Barker Plotkin, A., Khalid, S. 2016. Foundation Species Loss and Biodiversity of the Herbaceous Layer in New England Forests. Forests 7: article9.
- Ellison, A. M., Orwig, D. A., Barker Plotkin, A. A. 2017. Cut or girdle. In: Foster, D. R., Hemlock: A Forest Giant on the Edge, Yale University Press, New Haven, CT.
- Ellison, A. M., Orwig, D. A., Fitzpatrick, M. C., Preisser, E. L. 2018. The Past, Present, and Future of the Hemlock Woolly Adelgid (Adelges tsugae) and Its Ecological Interactions with Eastern Hemlock (Tsuga canadensis) Forests. Insects 9: 172-189.
- Farnsworth, E. J., Barker Plotkin, A., Ellison, A. M. 2012. The relative contributions of seed bank, seed rain, and understory vegetation dynamics to the reorganization of Tsuga canadensis forests after loss due to logging or simulated attack by Adelges tsugae. Canadian Journal of Forest Research 42: 2090-2105.
- Foster, D. R. 2013. Lessons from Harvard Forests and Ecologists: Bob Marshall’s Plot. Forest History Today Spring/Fall: 34-41.
- Foster, D. R., Baiser, B., Barker Plotkin, A., D'Amato, A. W., Ellison, A. M., Orwig, D. A., Oswald, W. W., Thompson, J. R. 2014. Hemlock: A Forest Giant on the Edge. Yale University Press, New Haven, CT.
- Orwig, D. A., Barker Plotkin, A., Davidson, E. A., Lux, H., Savage, K., Ellison, A. M. 2013. Foundation species loss affects vegetation structure more than ecosystemfunction in a northeastern USA forest. PeerJ 1: e41.
- Palmer, C. A., Barker Plotkin, A., Keiser, A. D. 2026. The speed of eastern hemlock loss alters the persistence of microbial legacies following hemlock woolly adelgid infestation. Forest Ecology and Management 600: 123304.
- Siddig, A. A., Ellison, A. M., Mathewson, B. G. 2016. Assessing the impacts of the decline of Tsuga canadensis stands on two amphibian species in a New England forest. Ecosphere 7: e01574.