- Ma, Z. 2021. Cross-Scale Analyses of Animal and Human Gut Microbiome Assemblies from Metacommunity to Global Landscape. mSystems 6: 10.1128/msystems.00633-21.
- Ma, Z., Ellison, A. M. 2024. Cross-scale scaling-law analyses for the heterogeneity and diversity of animal gut microbiomes from community to landscape. Oikos 2025: e10598.
- Ma, Z., Li, L. 2024. Biodiversity metrics on ecological networks: Demonstrated with animal gastrointestinal microbiomes. Zoological Research: Diversity and Conservation 1: 51-65.
- Ma, Z., Li, W., Shi, P. 2022. Microbiome–host-phylogeny relationships in animal gastrointestinal tract microbiomes. FEMS Microbiology Ecology 98: fiac021.
- Ma, Z., Shi, P. 2024. Critical complex network structures in animal gastrointestinal tract microbiomes. Animal Microbiome 6: 23.