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Research Publications
Soil Carbon and Nitrogen Dynamics: Since 1988
- Aber, J. D. 1992. Nitrogen Cycling and Nitrogen
Saturation in Temperate Forest Ecosystems. Trends in Ecology and
Evolution 7: 220-223.
- Aber, J. D. 1993. Modification of nitrogen cycling
at the regional scale: the subtle effects of atmospheric deposition. In: McDonnell, M. J., Pickett, S. T. A., Humans as Components of
Ecosystems, Springer-Verlag, NY.
- Aber, J. D. 2002. Nitrogen saturation in temperate
forest ecosystems: current theory, remaining questions and recent
advances. In: Horst, W. J., Burkert, A., Claassen, N., Flessa, H., Progress in Plant Nutrition:
Plenary Lectures of the XIV International Plant Nutrition Colloquium, Kluwer Academic Publishers, Dordrecht.
- Aber, J. D. 2004. Biogeochemistry: The Physiology
of Ecosystems. In: Foster, D. R., Aber, J. D., Forests in Time: The
Environmental Consequences of 1000 Years of Change in New England, Yale University Press, New Haven, CT.
- Aber, J. D., Driscoll, C. T. 1997. Effects of land use, climate
variation and N deposition on N cycling and C storage in northern hardwood
forests. Global Biogeochemical
Cycles 11: 639-648.
- Aber, J. D., Driscoll, C. T., Federer, C. A., Lathrop, R. G., Lovett, G., Melillo, J. M., Steudler, P. A., Vogelmann, J. 1993. A strategy for the regional
analysis of the effects of physical and chemical climate change on
biogeographical cycles in northeastern (U.S.) forests. Ecological Modelling 67: 37-47.
- Aber, J. D., Goodale, C. G., Ollinger, S. V., Hallett, R. A., Magill, A. H., Martin, M. E., Smith, M. L., Stoddard, J. L. 2003. Is Nitrogen Deposition Altering
the Nitrogen Status of Northeastern Forests?. BioScience 53: 375-389.
- Aber, J. D., Magill, A. H. 2004. Chronic nitrogen additions at
the Harvard Forest (USA): the first 15 years of a nitrogen saturation
experiment. Forest Ecology and
Management 196: 1-5.
- Aber, J. D., Magill, A., Boone, R. D., Melillo, J. M., Steudler, P. A., Bowden, R. D. 1993. Plant and soil responses to
chronic nitrogen additions at the Harvard Forest, Massachusetts. Ecological Applications 3: 156-166.
- Aber, J. D., Magill, A., McNulty, S. G., Boone, R. D., Nadelhoffer, K. J., Downs, M. R., Hallett, R. A. 1995. Forest biogeochemistry and
primary production altered by nitrogen saturation. Water, Air and Soil
Pollution 85: 1665-1670.
- Aber, J. D., Magill, A., Nadelhoffer, K. J., Melillo, J., Steudler, P. A., Hendricks, J. J., Bowden, R. D., Currie, W. S., McDowell, W., Berntson, G. M. 2004. Exploring the process of
nitrogen saturation. In: Foster, D. R., Aber, J. D., Forests in Time: The
Environmental Consequences of 1000 Years of Change in New England, Yale University Press, New Haven, CT.
- Aber, J. D., McDowell, W. H., Nadelhoffer, K. J., Magill, A. H., Berntson, G. M., Kamekea, M., McNulty, S. G., Currie, W. S., Rustad, L. E., Fernandez, I. 1998. Nitrogen Saturation in Temperate
Forest Ecosystems. BioScience 48: 921-934.
- Aber, J. D., Melillo, J. M., McClaugherty, C. A. 1990. Predicting long-term patterns of
mass loss, nitrogen dynamics, and soil organic matter formation from initial
fine litter chemistry in temperate forest ecosystems. Canadian Journal of
Botany 68: 2201-2208.
- Aber, J. D., Melillo, J. M., Nadelhoffer, K. J., Pastor, J., Boone, R. D. 1991. Factors controlling nitrogen
cycling and nitrogen saturation in northern temperate forest
ecosystems. Ecological Applications 1: 303-315.
- Aber, J. D., Nadelhoffer, K. J., Steudler, P., Melillo, J. M. 1989. Nitrogen Saturation in Northern
Forest Ecosystems. BioScience 39: 378-386.
- Aber, J. D., Ollinger, S. V., Federer, C. A., Driscoll, C. T. 1997. Modeling nitrogen saturation in
forest ecosystems in response to land use and atmospheric deposition. Ecological Modelling 101: 61-78.
- Aber, J. D., Wessman, C. A., Peterson, D. L., Melillo, J. M., Fownes, J. H. 1990. Remote Sensing of Litter and
Soil Organic Matter Decomposition in Forest Ecosystems. In: Mooney, Hobbs, Remote Sensing of Biosphere
Functioning, Springer-Verlag, New York, New York.
- Abramoff, R. Z., Davidson, E. A., Finzi, A. C. 2017. A parsimonious modular approach
to building a mechanistic belowground carbon and nitrogen model. Journal of Geophysical Research:
Biogeosciences 122: 2418-2434.
- Abramoff, R. Z., Finzi, A. C. 2016. Seasonality and partitioning of
root allocation to rhizosphere soils in a midlatitude forest. Ecosphere 7: e01547.
- Adair, E. C., Parton, W. J., Del Grosso, S. J., Silver, W. L., Harmon, M. E., Hall, S. A., Burke, I. C., Hart, S. C. 2008. Simple three-pool model
accurately describes patterns of long-term litter decomposition in diverse
climates. Global Change Biology 14: 2636-2660.
- Allen, A. 1995. Soil science and survey at
Harvard Forest. Soil Survey Horizons 36: 133-142.
- Alteio, L. V., Schulz, F., Seshadri, R., Varghese, N., Rodriguez-Reillo, E.
R., Goudeau, D., Eichorst, S. A., Malmstrom, R. R., Bowers, R. M., Katz, L. A., Blanchard, J. L., Woyke, T. 2020. Complementary Metagenomic
Approaches Improve Reconstruction of Microbial Diversity in a Forest
Soil. mSystems 5: e00768-19, 18 pp.
- Angert, A., Barkan, E., Barnett, B., Brugnoli, E., Davidson, E. A., Fessenden, J., Maneepong, S., Panapitukkul, N., Randerson, J. T., Savage, K. E., Yakir, D., Luz, B. 2003. Contribution of soil respiration
in tropical, temperate, and boreal forests to the 18O enrichment of
atmospheric O2. Global Biogeochemical
Cycles 17: 1089.
- Anthony, M. A., Frey, S. D., Stinson, K. A. 2017. Fungal community homogenization,
shift in dominant trophic guild, and appearance of novel taxa with biotic
invasion. Ecosphere 8: 17 pp.
- Anthony, M. A., Stinson, K. A., Moore, J. A. M., Frey, S. D. 2020. Plant invasion impacts on fungal
community structure and function depend on soil warming and nitrogen
enrichment. Oecologia 194: 659–672.
- Antibus, R. K., Linkins III, A. E. 1992. Effects of Liming a Red Pine
Forest Floor on Mycorrhizal Numbers and Mycorrhizal and Soil Acid
Phosphatase Activities. Soil Biology and
Biochemistry 24: 479-487.
- Bahn, M., Reichstein, M., Davidson, E. A., Grunzweig, J., Jung, M., Carbone, M. S., Epron, D., Misson, L., Nouvellon, Y., Roupsard, O., Savage, K. E., Trumbore, S. E., Gimeno, C., Curiel Yuste, J., Tang, J., Vargas, R., Janssens, I. 2010. Soil respiration at mean annual
temperature predicts annual total across vegetation types and biomes. Biogeosciences 7: 2147-2157.
- Baillie, I. C., Ashton, P. S., Chin, S. P., Davies, S. J., Palmioto, P. A., Russo, S. E., Tan, S. 2006. Spatial Associations of Humus,
Nutrients and Soils in Mixed Dipterocarp Forest at Lambir, Sarawak,
Malaysian Borneo. Journal of Tropical
Ecology 22: 543-553.
- Bain, W. G. 2002. Wind-induced systematic error in
the closed dynamic chamber soil respiration measurement method. Thesis, Harvard University.
- Bain, W. G., Hutyra, L. R., Patterson*, D. C., Bright, A. V., Daube, B. C., Munger, J. W., Wofsy, S. C. 2005. Wind-induced error in the
measurement of soil respiration using closed dynamic chambers. Agricultural and Forest
Meteorology 131: 225-232.
- Bell*, S. 2000. Microbial nitrogen utilization
under nitrogen-saturation conditions in temperate forests. Thesis, University of Oregon.
- Berbeco, J., Melillo, J. M., Orians, C. M. 2012. Soil warming accelerates
decomposition of fine woody debris. Plant and Soil 356: 405-417.
- Berberich, G. M., Berberich, M. B., Ellison, A. M., Wöhler, C. 2018. Degassing Rhythms and
Fluctuations of Geogenic Gases in A Red Wood-Ant Nest and in Soil in The
Neuwied Basin (East Eifel Volcanic Field, Germany). Insects 9: 135-159.
- Berberich, G. M., Ellison, A. M., Berberich, M. B., Grumpe, A., Becker, A., Wöhler, C. 2018. Can a Red Wood-Ant Nest Be
Associated with Fault-Related CH4 Micro-Seepage? A Case Study from
Continuous Short-Term In-Situ Sampling. Animals 8: 46-64.
- Berg, B., McClaugherty, C. 2003. Plant Litter: Decomposition,
Humus Formation, Carbon Sequestration. Springer-Verlag, Berlin.
- Berg, B., McClaugherty, C. A. 2003. Decomposition of Fine Root and
Woody Litter. In: , Plant Litter: Decomposition,
Humus Formation, Carbon Sequestration, Springer-Verlag, Berlin.
- Berliner, R., Torrey, J. G. 1989. On tripartite Frankia -
mycorrhizal associations in the Myricaceae. Canadian Journal of
Botany 67: 1708-1712.
- Berliner, R., Torrey, J. G. 1989. Studies on mycorrhizal
associations in Harvard Forest, Massachusetts. Canadian Journal of
Botany 67: 2245-2251.
- Berntson, G. M. 1996. Root growth and nitrogen cycling
in temperate deciduous forests in an elevated CO2 world. Thesis, Harvard University.
- Berntson, G. M. 1997. Topological scaling and plant
root system architecture: developmental and functional hierarchies. New Phytologist 135: 621-634.
- Berntson, G. M., Aber, J. D. 2000. Fast nitrate immobilization in
N-saturated temperate forest soils. Soil Biology and
Biochemistry 32: 151-156.
- Berntson, G. M., Bazzaz, F. A. 1996. Belowground positive and
negative feedbacks on CO2 growth enhancement. Plant and Soil 187: 119-131.
- Berntson, G. M., Bazzaz, F. A. 1996. The allometry of root production
and loss in seedlings of Acer rubrum (Aceraceae) and Betula papyrifera
(Betulaceae): implications for root dynamics in elevated CO2. American Journal of
Botany 83: 608-616.
- Berntson, G. M., Bazzaz, F. A. 1997. Elevated CO2 and the magnitude
and seasonal dynamics of root production and loss in Betula
papyrifera. Plant and Soil 190: 211-216.
- Berntson, G. M., Bazzaz, F. A. 1997. Nitrogen cycling in microcosms
of yellow birch exposed to elevated CO2: simultaneous positive and negative
belowground feedbacks. Global Change Biology 3: 247-258.
- Berntson, G. M., Bazzaz, F. A. 1998. Regenerating temperate forest
microcosms in elevated CO2: species composition, belowground growth and
nitrogen cycling. Oecologia 113: 115-125.
- Berntson, G. M., Lynch, J. P., Snapp, S. 1998. Fractal geometry and the
description of plant root systems: current perspectives and future
applications. In: Baveye, Parlage, Smith, Chaos and Fractals in Soil
Science, CRC Press, Boca Raton.
- Berntson, G. M., Wayne, P. M., Bazzaz, F. A. 1997. Belowground architectural and
mycorrhizal responses to elevated CO2 in Betula alleghaniensis
populations. Functional Ecology 11: 684-695.
- Bishop, D. A., Beier, C. M., Pederson, N., Lawrence, G. B., Stella, J. C., Sullivan, T. J 2015. Regional growth decline of sugar
maple (Acer saccharum) and its potential causes. Ecosphere 6: 1-14.
- Bledzki, L. A., Bubier, J. L., Ellison, A. M., Moore, T. R. 2018. Ecology of rotifers and their
unappreciated source of nitrogen and phosphorus in temperate northeastern
American bogs. Fundamental and Applied
Limnology 191: 277-287.
- Bonitti, E. E., Decant, J. P., Munson, S. M, Gathany, M. A., Przeszlowska, A., Haddix, M. L., Owens, S., Burke, I. C., Parton, W. J., Harmon, M. E. 2009. Litter decomposition in
grasslands of Central North America (US Great Plains). Global Change Biology 15: 1356-1363.
- Boone, R. D. 1992. Influence of Sampling Date and
Substrate on Nitrogen Mineralization: Comparison of Laboratory-Incubation
and Buried-Bag Methods For Two Massachusetts Forest Soils. Canadian Journal of Forest
Research 22: 1895-1990.
- Boone, R. D., Nadelhoffer, K. J., Canary, J. D., Kaye, J. P. 1998. Roots determine the temperature
sensitivity of soil respiration. Nature 396: 571-572.
- Borken, W., Davidson, E. A., Savage, K. E., Gaudinski, J. B., Trumbore, S. E. 2003. Drying and wetting effects on
carbon dioxide release from organic horizons. Soil Science Society of America
Journal 67: 1888-1896.
- Borken, W., Davidson, E. A., Savage, K. E., Sundquist, E. T., Stuedler, P. 2006. Effect of summer throughfall
exclusion, summer drought, and winter snow cover on methane fluxes in a
temperate forest soil. Soil Biology and
Biochemistry 38: 1388-1395.
- Borken, W., Savage, K. E., Davidson, E. A., Trumbore, S. E. 2006. Effects of experimental drought
on soil respiration and radiocarbon efflux from a temperate forest
soil. Global Change Biology 12: 177-193.
- Bowden, R. D., Castro, M. C., Melillo, J. M., Steudler, P. A., Aber, J. D. 1993. Fluxes of greenhouse gases
between soils and the atmosphere in a temperate forest following a simulated
hurricane blowdown. Biogeochemistry 21: 61-71.
- Bowden, R. D., Melillo, J. M., Steudler, P. A., Aber, J. D. 1991. Effects of nitrogen additions on
annual nitrous oxide fluxes from temperate forest soils in the northeastern
United States. Journal of Geophysical
Research 96: 9321-9328.
- Bowden, R. D., Nadelhoffer, K. J., Boone, R. D., Melillo, J. M., Garrison, J. B. 1993. Contributions of aboveground
litter, belowground litter, and root respiration to total soil respiration
in a temperate mixed hardwood forest. Canadian Journal of Forest
Research 123: 1402-1407.
- Bowden, R. D., Newkirk, K. M., Rullo, G. M. 1998. Carbon dioxide and methane
fluxes by a forest soil under laboratory-controlled moisture and temperature
conditions. Soil Biology and
Biochemistry 30: 1591-1597.
- Bowden, R. D., Steudler, P. A., Melillo, J. M., Aber, J. D. 1990. Annual nitrous oxide fluxes from
temperate forest soils in the northeastern United States. Journal of Geophysical
Research 95: 13997-14005.
- Bowden, R. D., Wurzbacher, S., Washko, S., Wind, L., Rice, A., Coble, A. E., Baldauf, N., Johnson, B., Wang, J., Simpson, M., Lajtha, K. 2019. Long-term Nitrogen Addition
Decreases Organic Matter Decomposition and Increases Forest Soil
Carbon. Soil Science Society of America
Journal 10.2136/sssaj2018.08.0293: 54 pp.
- Bradford, M. A., Wallenstein, M., Allison, S. D., Treseder, K. K., Frey, S., Watts, S. B., Davies, C. A., Maddox, T. R., Melillo, J. M., Mohan, J., Reynolds, J. F. 2009. Decreased mass specific
respiration under experimental warming is robust to the microbial biomass
method employed. Ecology Letters 12: E15-E18.
- Brzostek, E. R., Blair, J. M., Dukes, J. S., Frey, S. D., Hobbie, S. E., Melillo, J. M., Mitchell, R. J., Pendall, E., Reich, P. B., Shaver, G. R., Stefanski, A., Tjoelker, M. G., Finzi, A. C. 2012. The effect of experimental
warming and precipitation change on proteolytic enzyme activity: positive
feedbacks to nitrogen availability are not universal. Global Change Biology 18: 2617-2625.
- Brzostek, E. R., Greco, A., Drake, J., Finzi, A. C. 2013. Root carbon inputs to the
rhizosphere stimulate extracellular enzyme activity and increase nitrogen
availability in temperate forest soils. Biogeochemistry 115: 65-76.
- Burton, A. J., Melillo, J. M., Frey, S. D. 2008. Adjustment of Forest Ecosystem
Root Respiration as Temperature Warms. Journal of Integrative Plant
Biology 50: 1462-1483.
- Butler, S. M., Melillo, J. M., Johnson, J. E., Mohan, J. E., Stuedler, P. A., Lux, H., Burrows, E., Smith, R. M., Vario, C. L., Scott, L., Hill, T. D., Aponte*, N., Bowles, F. P. 2011. Soil warming alters nitrogen
cycling in a New England forest: implications for ecosystem function and
structure. Oecologia 168: 819-828.
- Campbell, J. L., Rustad, L. E., Boyer, E. W., Christopher, S. F., Driscoll, C. T., Fernandez, I. J., Groffman, P. M., Houle, D., Kiekbusch, J., Magill, A. H., Mitchell, M. J., Ollinger, S. V. 2009. Consequences of climate change
for biogeochemical cycling in forests of northeastern North America. Canadian Journal of Forest
Research 39: 264-284.
- Carey, J. C., Tang, J., Templer, P. H., Kroeger, K. D., Crowther, T. W., Burton, A. J., Dukes, J. S., Emmett, B., Frey, S. D., Heskel, M. A., Jiang, L., Machmuller, M. B., Mohan, J., Panetta, A., Reich, P. B., Reinsch, S., Wang, X., Allison, S. D. , Bamminger, C., Bridgham, S., Collins, S. L., de Dato, G., Eddy, W. C., Enquist, B. J., Estiarte, M., Harte, J., Henderson, A., Johnson, B. R., Steenberg Larsen, K., Luo, Y., Marhan, S., Melillo, J. M., Peñuelas, J., Pfeifer-Meister, L., Poll, C., Rastetter, E., Reinmann, A. B., Reynolds, L. L., Schmidt, I. K., Shaver, G. R., Strong, A. L., Suseela, V., Tietema, A. 2016. Temperature response of soil
respiration largely unaltered with experimental warming. PNAS 113: 13797–13802.
- Caron, S., Garvey, S. M., Gewirtzman, J., Schultz, K., Bhatnagar, J. M., Driscoll, C. T., Hutyra, L. R., Templer, P. H. 2023. Urbanization and fragmentation
have opposing effects on soil nitrogen availability in temperate forest
ecosystems. Global Change Biology 29: 2156-2171.
- Castro, M. S., Steudler, P. A., Melillo, J. M., Aber, J. D., Bowden, R. D. 1995. Factors controlling atmospheric
methane consumption by temperate forest soils. Global Biogeochemical
Cycles 9: 1-10.
- Castro, M. S., Steudler, P. A., Melillo, J. M., Aber, J. D., Millham, S. E. 1993. Exchange of N2O and CH4 between
the atmosphere and soils in spruce-fir forests in the northeastern United
States. Biogeochemistry 18: 119-135.
- Chaib de Mares, M., Hess, J., Floudas, D., Lipzen, A., Choi, C., Kennedy, M., Grigoriev, I. V., Pringle, A. 2015. Horizontal transfer of
carbohydrate metabolism genes into ectomycorrhizal Amanita. New Phytologist 205: 1552-1564.
- Chan, A. S. K., Steudler, P. A., Bowden, R. D., Gulledge, J., Cavanaugh, C. 2005. Consequences of nitrogen
fertilization on soil methane consumption in a productive temperate
deciduous forest. Biology and Fertility of
Soils 41: 182-189.
- Chaput, G., Ford, J., DeDiego, L., Narayanan, A., Tam, W. Y., Whalen, M., Huntemann, M., Clum, A., Spunde, A., Pillay, M., Palaniappan, K., Varghese, N., Mikhailova, N., Chen, I-M., Stamatis, D., Reddy, T. B. K., O'Malley, R., Daum, C., Shapiro, N., Ivanova, N., Kyrpides, N. C., Woyke, T. , Glavina del Rio, T., DeAngelis, K. 2019. Complete Genome Sequence of
Serratia quinivorans Strain 124R, a Facultative Anaerobe Isolated on
Organosolv Lignin as a Sole Carbon Source. Microbiology Resource
Announcements 8: e00409-19, 3 pp.
- Chari, N. R., Taylor, B. N. 2022. Soil organic matter formation
and loss are mediated by root exudates in a temperate forest. Nature Geoscience 15: 1011-1016.
- Cinoglu, D., Epstein, H. E., Tepley, A. J., Anderson-Teixeira, K.
J., Thompson, J. R., Perakis, S. S. 2021. Climatic Aridity Shapes
Post-Fire Interactions between Ceanothus spp. and Douglas-Fir (Pseudotsuga
menziesii) across the Klamath Mountains. Forests 12: article 1567, 15 pp.
- Cole, D. W., Compton, J. E., Homann, P. S., Edmonds, R. L., Miegroet, H. V. 1995. Comparison of carbon
accumulation in Douglas fir and red alder forests. In: Kelly, J. M., McFee, W. W., Carbon Forms and Functions in
Forest Soils, Soil Science Society of
American, Madison, WI.
- Compton, J. E, Watrud, L. S., Porteous, L. A., DeGrood*, S. 2004. Response of soil microbial
biomass and community composition to chronic nitrogen additions at Harvard
Forest. Forest Ecology and
Management 196: 143-158.
- Compton, J. E., Boone, R. D. 2000. Long-term impacts of agriculture
on soil carbon and nitrogen in New England forests. Ecology 81: 2314-2330.
- Compton, J. E., Boone, R. D. 2004. Land-use legacies on soil
properties and nutrients. In: Foster, D. R., Aber, J. D., Forests in Time: The
Environmental Consequences of 1000 Years of Change in New England, Yale University Press, New Haven, CT.
- Compton, J. E., Boone, R. D., Motzkin, G., Foster, D. R. 1998. Soil carbon and nitrogen in a
pine-oak sand plain in central Massachusetts: role of vegetation and
land-use history. Oecologia 116: 536-542.
- Conant, R. T., Ryan, M. G., Ågren, G. I., Birge, H. E., Bradford, M. A., Davidson, E. A., Eliasson, P. E., Evans, S. E., Frey, S. D., Giardina, C. P., Hopkins, F., Hyvönen, R., Kirschbaum, M. U. F., Lavallee, J. M., Leifeld, J., Parton, W. J., Steinweg, J. M., Wallenstein, M. D., Wetterstedt, J. A.
M. 2011. Temperature and soil organic
matter decomposition rates – synthesis of current knowledge and a way
forward. Global Change Biology 17: 3392-3404.
- Conrad-Rooney*, E., Barker Plotkin, A., Pasquarella, V. J., Elkinton, J., Chandler, J. L., Matthes, J. H. 2020. Defoliation severity is
positively related to soil solution nitrogen availability and negatively
related to soil nitrogen concentrations following a multi-year invasive
insect irruption. Annals of Botany Plants 12: 9 pp.
- Contosta, A. R. 2011. Seasonal, Biogeochemical, and
Microbial Response of Soils to Simultaneous Warming and Nitrogen
Additions. Thesis, University of New Hampshire, Durham,
NH.
- Contosta, A. R., Frey, S. D., Cooper, A. B. 2011. Seasonal dynamics of soil
respiration and nitrogen mineralization in chronically warmed and fertilized
soils. Ecosphere 2: 1-21.
- Contosta, A. R., Frey, S. D., Cooper, A. B. 2015. Soil microbial communities vary
as much over time as with chronic warming and nitrogen additions. Soil Biology and
Biochemistry 88: 19-24.
- Contosta, A. R., Frey, S. D., Ollinger, S. V., Cooper, A. 2013. Soil respiration does not
acclimatize to warmer temperatures when modeled over seasonal
timescales. Biogeochemistry 112: 555-570.
- Craig, M. E., Geyer, K. M., Beidler, K. V., Brzostek, E. R., Frey, Serita D., Stuart Grandy, A., Liang, C., Phillips, R. P. 2022. Fast-decaying plant litter
enhances soil carbon in temperate forests but not through microbial
physiological traits. Nature Communications 13: 1229.
- Cregger, M. A., Sanders, N. J., Dunn, R. R., Classen, A. T. 2014. Microbial communities respond to
experimental warming, but site matters. PeerJ 2: e358.
- Crowther, T. W., Thomas, S. M., Maynard, D. S., Baldrian, P., Covey, K., Frey, S. D., van Diepen, L. T. A., Bradford, M. A. 2015. Biotic interactions mediate soil
microbial feedbacks to climate change. PNAS 112: 7033-7038.
- Crowther, T. W., Todd-Brown, K. E. O., Rowe, C. W., Wieder, W. R., Carey, J. C., Machmuller, M. B., Snoek, B. L., Fang, S., Zhou, G., Allison, S. D., Blair, J. M., Bridgham, S. D., Burton, A. J., Carrillo, Y., Reich, P. B., Clark, J. S., Classen, A. T., Dijkstra, F. A., Elberling, B., Emmett, B. A., Estiarte, M., Frey, S. D., Guo, J., Harte, J., Jiang, L., Johnson, B. R., Kröel-Dulay, G., Larsen, K. S., Laudon, H., Lavallee, J. M., Luo, Y., Lupascu, M., Ma, L. N., Marhan, S., Michelsen, A., Mohan, J., Niu, S., Pendall, E., Peñuelas, J., Pfeifer-Meister, L., Poll, C., Reinsch, S., Reynolds, L. L., Schmidt, I. K., Sistla, S., Sokol, N. W., Templer, P. H., Treseder, K. K., Welker, J. M., Bradford, M. A. 2016. Quantifying global soil carbon
losses in response to warming. Nature 540: 104-108.
- Currie, W. S. 1995. Forest floor leachate
biogeochemistry and decomposition dynamics. Thesis, University of New Hampshire.
- Currie, W. S. 1999. The responsive C and N
biogeochemistry of the temperate forest floor. TREE 14: 316-320.
- Currie, W. S. 2003. Relationships between carbon
turnover and bioavailable energy fluxes in two temperate forest
soils. Global Change Biology 9: 919-929.
- Currie, W. S., Aber, J. D. 1997. Modeling leaching as a
decomposition process in humid, montane forests. Ecology 78: 1844-1860.
- Currie, W. S., Aber, J. D., Driscoll, C. T. 1999. Leaching of nutrient cations
from the forests floor: effects of nitrogen saturation in two long-term
manipulations. Canadian Journal of Forest
Research 29: 609-620.
- Currie, W. S., Aber, J. D., McDowell, W. H., Boone, R. D., McGill, A. H. 1996. Vertical transport of dissolved
organic C and N under long-term N amendments in pine and hardwood
forests. Biochemistry 35: 471-505.
- Currie, W. S., Nadelhoffer, K. J. 1999. Dynamic redistribution of
isotopically labeled cohorts of nitrogen inputs in two temperate
forests. Ecosystems 2: 4-18.
- Currie, W. S., Nadelhoffer, K. J. 2003. The imprint of land use history:
patterns of carbon and nitrogen in downed woody debris at the Harvard
Forest. Ecosystems 5: 446-460.
- Currie, W. S., Nadelhoffer, K. J., Aber, J. D. 1999. Soil detrital processes
controlling the movement of 15N tracers to forest vegetation. Ecological Applications 9: 87-102.
- Currie, W. S., Nadelhoffer, K. J., Aber, J. D. 2004. Redistributions of 15N highlight
turnover and replenishment of mineral soil organic N as a long-term control
on forest C balance. Forest Ecology and
Management 196: 109-127.
- Currie, W. S., Nadelhoffer, K. J., Colman, B. P. 2002. Long-term movement of 15N
tracers into fine woody debris under chronically elevated N inputs. Plant and Soil 238: 313-323.
- Cusack, D. F., Chou, W. W., Yang, W. H., Harmon, M. E., Silver, W. L., LIDET 2009. Controls on long-term root and
leaf litter decomposition in neotropical forests. Global Change Biology 15: 1339-1355.
- Dail, D. B., Davidson, E. A., Chrover, J. 2001. Rapid abiotic transformation of
nitrate in an acid forest soil. Biogeochemistry 54: 131-146.
- Davidson, E. A., Belk, E., Boone, R. D. 1998. Soil and water content and
temperature as independent or confounded factors controlling soil
respiration in a temperate mixed hardwood forest. Global Change Biology 4: 217-228.
- Davidson, E. A., Chorover, J., Dail, B. D. 2003. A mechanism of abiotic
immobilization of nitrate in forest ecosystems: The ferrous wheel
hypothesis. Global Change Biology 9:: 228-236.
- Davidson, E. A., Holbrook, N. M. 2009. Is temporal variation of soil
respiration linked to the phenology of photosynthesis?. In: Noorments, A., Phenology of Ecosystem
processes, Springer, New York.
- Davidson, E. A., Janssens, I. 2006. Temperature sensitivity of soil
carbon decomposition and feedbacks to climate change. Nature 440: 165-173.
- Davidson, E. A., Janssens, I., Luo, Y. 2006. On the variability of
respiration in terrestrial ecosystems: moving beyond Q10. Global Change Biology 12: 154-164.
- Davidson, E. A., Samanta, S., Caramori, S. S., Savage, K. 2012. The Dual Arrhenius and
Michaelis–Menten kinetics model for decomposition of soil organic matter at
hourly to seasonal time scales. Global Change Biology 18: 371–384.
- Davidson, E. A., Savage, K. E., Bolstad, P. V., Clark, D. A., Curtis, P. S., Ellsworth, D. S., Hanson, P. J., Law, B. E., Luo, Y., Pregitzer, K. S., Randolph, J. C., Zak, D. 2002. Belowground carbon allocation in
forests estimated from litterfall and IRGA-based soil respiration
measurements. Agricultural and Forest
Meteorology 113: 39-51.
- Davidson, E. A., Savage, K. E., Trumbore, S. E., Borken, W. 2006. Vertical partitioning of CO2
production within a temperate forest soil. Global Change Biology 12: 944-956.
- Davidson, E. A., Savage, K. E., Verchot, L. V., Navarro*, R. I. 2002. Minimizing artifacts and biases
in chamber-based measurements of soil respiration. Agricultural and Forest
Meteorology 113: 21-37.
- DeAngelis, K. M., Pold, G. 2020. Genome Sequences of Frankineae
sp. Strain MT45 and Jatrophihabitans sp. Strain GAS493, Two Actinobacteria
Isolated from Forest Soil. Microbiology Resource
Announcements 9: e00614-20, 3 pp.
- DeAngelis, K. M., Pold, G., Topcuonglu, B. D., van Diepen, L. T. A., Varney, R., Blanchard, J., Melillo, J. M., Frey, S. D. 2015. Long-term forest soil warming
alters microbial communities in temperate forest soils. Frontiers in
Microbiology 6: 104.
- DeAngelis, K. M., Priyanka, R. C., Pold, G., Romero Olivares, A., Frey, S. D. 2019. Microbial responses to
experimental soil warming: Five testable hypotheses. In: Mohan, J. E., Ecosystem Consequences of Soil
Warming, Academic Press, Cambridge.
- Deane McKenna, M., Grams, S. E., Barasha, M., Antoninka, A. J., Johnson, N. C. 2022. Organic and inorganic soil
carbon in a semi-arid rangeland is primarily related to abiotic factors and
not livestock grazing. Geoderma 419: article 115844.
- Decina, S. M., Hutyra, L. R., Gately, C. K., Getson, J. M., Reinmann, A. B., Short Gianotti, A.
G., Templer, P. H. 2016. Soil respiration contributes
substantially to urban carbon fluxes in the greater Boston area. Environmental Pollution 212: 433-439.
- Del Toro, I., Ribbons, R. R., Ellison, A. M. 2015. Ant-mediated ecosystem functions
on a warmer planet: effects on soil movement, decomposition and nutrient
cycling. Journal of Animal
Ecology 84: 1233-1241.
- Domeignoz-Horta, L.
A., DeAngelis, K. M., Pold, G. 2019. Draft Genome Sequence of
Acidobacteria Group 1 Acidipila sp. Strain EB88, Isolated from Forest
Soil. Microbiology Resource
Announcements 8: e01464-18, 2 pp.
- Domeignoz-Horta, L.
A., Pold, G., Erb, H., Sebag, D., Verrecchia, E., Northen, T., Louie, K., Eloe-Fadrosh, E., Pennacchio, C., Knorr, M. A., Frey, S. D., Melillo, J. M., DeAngelis, K. M. 2022. Substrate availability and not
thermal acclimation controls microbial temperature sensitivity response to
long-term warming. Global Change Biology 29: 1574 - 1590.
- Domeignoz-Horta, L.
A., Pold, G., Liu, X. A., Frey, S. D., Melillo, J. M., DeAngelis, K. M. 2020. Microbial diversity drives
carbon use efficiency in a model soil. Nature Communications 11: article 3684, 10 pp.
- Downs, M. R., Nadelhoffer, K. J., Melillo, J. M., Aber, J. D. 1993. Foliar and fine root nitrate
reductase activity in seedlings of four forest tree species in relation to
nitrogen availability. Trees, Structure and
Function 7: 233-236.
- Downs, M. R., Nadelhoffer, K. J., Melillo, J. M., Aber, J. D. 1996. Immobilization of a 15N labelled
nitrate addition by decomposing forest litter. Oecologia 105: 141-150.
- Drake, J. E., Darby, B. A., Giasson, M.-A., Kramer, M. A., Phillips, R. P., Finzi, A. C. 2013. Stoichiometry constrains
microbial responses to root exudation: insights from a model and experiment
in a temperate forest. Biogeosciences 10: 821-838.
- Drake, J. E., Giasson, M.-A., Spiller, K. J., Finzi, A. C. 2013. Seasonal plasticity in the
temperature sensitivity of microbial activity in three temperate forest
soils. Ecosphere 4: art77.
- Feigl, B. J., Melillo, J. M., Cerri, C. C. 1995. Changes in the origin and
quality of soil organic matter after pasture introduction in Rondônia
(Brazil). Plant and Soil 175: 21-29.
- Finzi, A. C., Ausin, A. T., Cleland, E. E., Frey, S. D., Houlton, B. Z., Wallenstein, M. D. 2011. Responses and feedbacks of
coupled biogeochemical cycles to climate change: examples from terrestrial
ecosystems. Frontiers in Ecology and the
Environment 9: 61-67.
- Finzi, A. C., Giasson, M.-A., Barker Plotkin, A., Aber, J. D., Boose, E. R., Davidson, E. A., Dietze, M. C., Ellison, A. M., Frey, S. D., Goldman, E., Keenan, T. F., Melillo, J. M., Munger, J. W., Nadelhoffer, K. J., Ollinger, S. V., Orwig, D. A., Pederson, N., Richardson, A. D., Savage, K., Tang, J., Thompson, J. R., Williams, C. A., Wofsy, S. C., Zhou, Z., Foster, D. R. 2020. Carbon budget of the Harvard
Forest Long-Term Ecological Research site: pattern, process, and response to
global change. Ecological Monographs 90: e01423, 37 pp.
- Finzi, A. C., Raymer, P. C. L., Giasson, M.-A., Orwig, D. A. 2014. Net Primary production and soil
respiration in New England hemlock forests affected by the hemlock woolly
adelgid. Ecosphere 5: 98.
- Foster, D. R., Aber, J. D. 2004. Forests in Time: The
Environmental Consequences of 1000 Years of Change in New England. Yale University Press, New Haven, CT.
- Frey, S. D. 2019. Mycorrhizal Fungi as Mediators
of Soil Organic Matter Dynamics. Annual Review of Ecology,
Evolution, and Systematics 50: 237-259.
- Frey, S. D., Drijber, R., Smith, H., Melillo, J. 2008. Microbial biomass, functional
capacity, and community composition after twelve years of soil
warming. Soil Biology and
Biochemistry 40: 2904-2907.
- Frey, S. D., Knorr, M., Parrent, J. L., Simpson, R. T. 2004. Chronic nitrogen enrichment
affects the structure and function of the soil microbial community in
temperate hardwood and pine forests. Forest Ecology and
Management 196: 159-171.
- Frey, S. D., Lee, J., Melillo, J. M., Six, J. W. 2013. The temperature response of soil
microbial efficiency and its feedback to climate. Nature Climate Change 3: 395-398.
- Frey, S. D., Ollinger, S. V., Nadelhoffer, K. J., Bowden, R. D., Brzostek, E. R., Burton, A. J., Caldwell, B. A., Crow, S., Goodale, C. G., Grandy, A. S., Finzi, A. C., Kramer, M. G., Lajtha, K., LeMoine, J., Martin, M., McDowell, W. H., Minocha, R., Sadowsky, J. J., Templer, P. H., Wickings, K. 2014. Chronic nitrogen additions
suppress decomposition and sequester soil carbon in temperate
forests. Biogeochemistry 121: 305-316.
- Fry, B., Jones, D. E., Kling, G. W., McKane, R. B., Nadelhoffer, K. J., Peterson, B. J. 1995. Adding 15N tracers to ecosystem
experiments. In: Wada, E., Yoneyama, T., Minagawa, M., Ando, T., Fry, B., Stable Isotopes in the
Biosphere, Kyoto University Press, Kyoto, Japan.
- Fuller, J. L., Foster, D. R., Motzkin, G., McLachlan, J., Barry, S. 2004. Broad-scale forest response to
land-use and climate change. In: Foster, D. R., Aber, J. D., Forests in Time: The
Environmental Consequences of 1000 Years of Change in New England, Yale University Press, New Haven, CT.
- Garvey, S. M., Templer, P. H., Bhatnagar, J. M., Hutyra, L. R. 2023. Soils at the temperate forest
edge: An investigation of soil characteristics and carbon dynamics. Science of The Total
Environment 891: 164320.
- Garvey, S. M., Templer, P. H., Pierce, E. A., Reinmann, A. B., Hutyra, L. R. 2022. Diverging patterns at the forest
edge: Soil respiration dynamics of fragmented forests in urban and rural
areas. Global Change Biology 28: 3094-3109.
- Gast, P. R. 1931. "Comment" in the
physical properties of the cove soils. Black Rock Forest
Bulletin No. 2: 35-37.
- Gaudinski, J. B., Trumbore, S. E., Davidson, E. A., Belk, E. 1997. Determination of organic carbon
turnover rates at Harvard Forest, Massachusetts. Proceedings of Agronomy Abstracts Annual
Meeting. Anaheim, CA.
- Gaudinski, J. B., Trumbore, S. E., Davidson, E. A., Richter, A. 2001. The age of fine-root carbon in
three forests of the eastern United States measured by radiocarbon. Oecologia 129: 420-429.
- Gaudinski, J. B., Trumbore, S. E., Davidson, E. A., Zheng, S. 2000. Soil carbon cycling in a
temperate forest: radiocarbon-based estimates of residence times,
sequestration rates and partitioning of fluxes. Biogeochemistry 51: 33-69.
- Geyer, K. M., Schnecker, J., Grandy, A. S., Richter, A., Frey, S. D. 2020. Assessing microbial residues in
soil as a potential carbon sink and moderator of carbon use
efficiency. Biogeochemistry 151: 237–249.
- Giasson, M.-A., Averill, C. C., Finzi, A. C. 2014. Correction factors for dissolved
organic carbon extracted from soil, measured using the Mn(III)-pyrophosphate
colorimetric method adapted for a microplate reader. Soil Biology and
Biochemistry 78: 284-287.
- Giasson, M.-A., Ellison, A. M., Bowden, R. D., Crill, P. M., Davidson, E. A., Drake, J. E., Frey, S. D., Hadley, J. L., Lavine, M., Melillo, J. M., Munger, J. W., Nadelhoffer, K. J., Nicoll, L., Ollinger, S. V., Savage, K., Steudler, P. A., Tang, J., Varner, R. K., Wofsy, S. C., Foster, D. R., Finzi, A. C. 2013. Soil respiration in a
northeastern US temperate forest: a 22-year synthesis. Ecosphere 4: article 140.
- Gill, A. L., Grinder, R. M., See, C. R., Chapin, F. S., DeLancey, L. C., Fisk, M. C., Groffman, P. M., Harms, T., Hobbie, S. E., Knoepp, J. D., Knops, J. M. H., Mack, M., Reich, P. B., Keiser, A. D. 2023. Soil carbon availability
decouples net nitrogen mineralization and net nitrification across United
States Long Term Ecological Research sites. Biogeochemistry 162: 13-24.
- Gilliam, F. S., Burns, D. A., Driscoll, C. T., Frey, S. D., Lovett, G. M., Watmough, S. A. 2019. Decreased atmospheric nitrogen
deposition in eastern North America: Predicted responses of forest
ecosystems. Environmental Pollution 244: 560-574.
- Godbold, D. L., Berntson, G. M. 1997. Elevated atmospheric CO2
concentrations lead to changes in ectomycorrhizal morphotype assemblages in
Betula papyrifera. Tree Physiology 17: 347-350.
- Godbold, D. L., Berntson, G. M., Bazzaz, F. A. 1997. Growth and mycorrhizal
colonization of three North-American tree species under elevated atmospheric
CO2. New Phytologist 137: 433-440.
- Goodale, C. L., Aber, J. D. 2000. The long-term effects of
land-use history on nitrogen cycling in northern hardwood forests. Ecological Applications 11: 253-267.
- Goodale, C. L., Aber, J. D., McDowell, W. H. 2000. The long-term effects of
disturbance on organic and inorganic nitrogen export in the White Mountains,
New Hampshire. Ecosystems 3: 433-450.
- Green, M. B., Pardo, L. H., Campbell, J. L., Rosi, E., Bernhardt, E. S., Driscoll, C. T., Fahey, T. J., LoRusso, N., Matthes, J., Templer, P. H. 2023. Combination of factors rather
than single disturbance drives perturbation of the nitrogen cycle in a
temperate forest. Biogeochemistry 166: 139-157.
- Harmon, M. E., Nadelhoffer, K. J., Blair, J. M. 1999. Measuring decomposition,
nutrient turnover and stores in plant litter. In: Robertson, G. P., Bledsoe, C. S., Coleman, D. C., Sollins, P., Standard Soil Methods for Long
Term Ecological Research, Oxford University Press, New York.
- Harmon, M. E., Silver, W. L., Fasth, B., Chen, H., Burke, I. C., Parton, W. J., Hart, S. C., Currie, W. S., LIDET 2009. Long-term patterns of mass loss
during the decomposition of leaf and fine root litter: an intersite
comparison. Global Change Biology 15: 1320-1338.
- Harms, T. K., Groffman, P. M., Aluwihare, L., Craft, C., Wieder, W. R., Hobbie, S. E., Baer, S. G., Blair, J. M., Frey, S. D., Remucal, C. K., Rudgers, J. A., Collins, S. L. 2021. Patterns and trends of organic
matter processing and transport: Insights from the US long-term ecological
research network. Climate Change Ecology 2: article 100025, 12 pp.
- Hartley, A. E., Neill, C., Crabtree, R. C., Melillo, J. M., Bowles, F. P. 1999. Plant performance and soil N
mineralization in response to simulated climate change in subarctic dwarf
shrub heath. Oikos 86: 331-343.
- Hendricks, J. J. 1994. Assessing the effects of
nitrogen availability on fine root turnover and tissue chemistry in forest
ecosystems. Thesis, University of New Hampshire.
- Hendricks, J. J., Aber, J. D., Nadelhoffer, K. J., Hallett, R. D. 2000. Nitrogen controls on fine root
substrate quality in temperate forest ecosystems. Ecosystems 3: 57-69.
- Hendricks, J. J., Nadelhoffer, K. J., Aber, J. D. 1993. The role of fine roots in energy
and nutrient cycling. Trends in Ecology and
Evolution 8: 174-178.
- Hendricks, J. J., Nadelhoffer, K. J., Aber, J. D. 1997. A 15N tracer technique for
assessing fine root production and turnover. Oecologia 112: 300-304.
- Heuck, C., Smolka, G., Whalen, E., Frey, S. D., Gundersen, P., Moldan, F., Fernandez, I. J., Spohn, M. 2018. Effects of long-term nitrogen
addition on phosphorus cycling in organic soil horizons of temperate
forests. Biogeochemistry 141: 167-181.
- Hobbie, E. A. 2005. Using isotopic tracers to follow
carbon and nitrogen cycling of fungi. In: J. Dighton, P. Oudemans, J. White, The Fungal Community: Its
Organization and Role in the Ecosystem, CRC Press, Boca Raton, Florida.
- Hobbie, E. A. 2006. Carbon allocation to
ectomycorrhizal fungi correlates with total belowground allocation in
culture studies. Ecology 87: 563-569.
- Hobbie, E. A., Wallander, H. 2006. Integrating ectomycorrhizal
fungi into quantitative frameworks of forest carbon and nitrogen
cycling. In: Gadd, G. M., Fungi in Biogeochemical
Cycles, Cambridge University Press, Cambridge.
- Hobbie, J. E., Hobbie, E. A. 2006. 15N content in symbiotic fungi
and plants estimates nitrogen and carbon flux rates in Arctic tundra. Ecology 87: 816-822.
- Holbrook, N. M., Zwieniecki, M. A. 1999. Embolism repair and xylem
tension: do we need a miracle?. Plant Physiology 120: 7-10.
- Holbrook, N. M., Zwieniecki, M. A., Melcher, P. J. 2002. The dynamics of "dead"
wood: maintenance of water transport through plant stems. Integrative and Comparative
Biology 42: 492-496.
- Jefts, S., Orwig, D. A. 2005. The effects of HWA outbreaks on
ecosystem level changes in southern New England. Proceedings of 3rd Symposium on Hemlock Woolly
Adelgid in the Eastern United States. Newtown, PA.
- Jenkins, J. C., Aber, J. D., Canham, C. 1999. Hemlock woolly adelgid impacts
on community structure and N cycling rates in eastern hemlock forest. Canadian Journal of Forest
Research 29: 630-645.
- Johnson, N. C., Gibson, K. S. 2021. Understanding Multilevel
Selection May Facilitate Management of Arbuscular Mycorrhizae in Sustainable
Agroecosystems. Frontiers in Plant
Science 11: article 627345, 7 pp.
- Jones, J. A., Groffman, P. M., Blair, J., Davis, F. W., Dugan, H., Euskirchen, E. S., Frey, S. D., Harms, T. K., Hinckley, E., Kosmala, M., Loberg, S., Malone, S., Novick, K., Record, S., Rocha, A. V., Ruddell, B. L., Stanley, E. H., Sturtevant, C., Thorpe, A., White, T., Wieder, W. R., Zhai, L., Zhu, K. 2021. Synergies Among Environmental
Science Research and Monitoring Networks: A Research Agenda. Earth's Future 9: e2020EF001631, 17 pp.
- Jones, M. E., Nico, P. S., Ying, S., Regier, T., Thieme, H., Keiluweit, M. 2018. Manganese-Driven Carbon
Oxidation at Oxic−Anoxic Interfaces. Environmental Science and
Technology 52: 12349-12357.
- Kamble, P. N., Rousk, J., Frey, S. D., Baath, E. 2013. Bacterial growth and growth
limiting nutrients following chronic nitrogen additions to a hardwood forest
soil. Soil Biology and
Biochemistry 59: 32-37.
- Kicklighter, D. W., Melillo, J. M., Peterjohn, W. T., Rastetter, E. B., McGuire, A. D., Steudler, P. A., Aber, J. D. 1994. Aspects of spatial and temporal
aggregation in estimating regional carbon dioxide fluxes from temperate
forest soils. Journal of Geophysical
Research 99: 1303-1315.
- Kitzmiller, C. E., Tran, W. C., Sullivan, B., Cortez, F., Choudoir, M., Simoes, R., Dayarathne, N., DeAngelis, K. M. 2023. High-quality genomes of
Paenibacillus spp. RC334 and RC343, isolated from a long-term forest soil
warming experiment. Microbiology Resource
Announcements 12: e00371-23.
- LaCroix, R. E., Walpen, N., Sander, M., Tfaily, M. M., Blanchard, J. L., Keiluweit, M. 2021. Long-Term Warming Decreases
Redox Capacity of Soil Organic Matter. Environmental Science and
Technology Letters 8: 92-97.
- Lajtha, K., Bowden, R. D., Nadelhoffer, K. J. 2014. Litter and Root Manipulations
Provide Insights into Soil Organic Matter Dynamics and Stability. Soil Science Society of America
Journal 78(S1): S261-S269.
- Lawrence, D., D'Ordorico, P., Diekmann, L., DeLonge, M. D. R., Eaton, E. 2007. Ecological feedbacks following
deforestation create the potential for a catastrophic ecosystem shift in
tropical dry forest. Proceedings of the National
Academy of Sciences 104: 20696-20701.
- Lawrence, D., Foster, D. R. 2001. Determinants of regional
variability in litter production of forests in the Southern Yucatan:
environmental gradients or human legacy?. Eos. Trans. AGU 82: B22A-01.
- Lawrence, D., Foster, D. R. 2002. Changes in forest biomass,
litter dynamics and soils following shifting cultivation in southern Mexico:
an overview. Interciencia 27: 400-408.
- Lawrence, D., Foster, D. R. 2003. Recovery of Nutrient Cycling and
Ecosystem Properties Following Swidden Cultivation: Regional and Stand-Level
Constraints. In: Turner, B. L., Geoghegan, J., Foster, D. R., Integrated Land Change Science
and Tropical Deforestation in Southern Yucatán: Final Frontiers, Oxford University Press, New York.
- Lewis, D. A., Garrison, W., Wommack, E., Whittemore, A., Steudler, P. A., Melillo, J. 1999. Influence of environmental
changes on degradation of chiral pollutants in soils. Nature 401: 898-901.
- Li, J., Wang, G., Mayes, M. A., Allison, S. D., Frey, S. D., Shi, Z., Hu, X., Luo, Y., Melillo, J. M. 2019. Reduced carbon use efficiency
and increased microbial turnover with soil warming. Global Change Biology 25: 900-910.
- Linkins, A. E., Sinsabaugh, R. L., McClaugherty, C. M., Melillo, J. M. 1990. Comparison of cellulase activity
on decomposing leaves in a hardwood forest and woodland stream. Soil Biology and
Biochemistry 22: 423-425.
- Liu, X. A., Frey, S. D., Melillo, J. M., DeAngelis, K. M. 2021. Physical protection regulates
microbial thermal responses to chronic soil warming. Soil Biology and
Biochemistry 159: article 108298, 5 pp.
- Liu, X. A., Pold, G., Domeignoz-Horta, L.
A., Geyer, K. M., Caris, H., Nicholson, H., Kemner, K. M., Frey, S. D., Melillo, J. M., DeAngelis, K. M. 2021. Soil aggregate-mediated
microbial responses to long-term warming. Soil Biology and
Biochemistry 152: article 108055.
- Lyford, W. H. 1974. Narrow soils and intricate soil
patterns in southern New England. Geoderma 11: 195-208.
- Lyford, W. H., Troedsson, T. 1973. Fragipan horizons in soils on
moraines near Garpenberg, Sweden. Studia Forestalia
Suecica 108: 1-21.
- Magill, A. H., Aber, J. D. 1998. Long-term effects of chronic
nitrogen additions on foliar litter decay and humus formation in forest
ecosystems. Plant and Soil 203: 301-311.
- Magill, A. H., Aber, J. D. 2000. Dissolved organic carbon and
nitrogen relationships in forest litter as affected by nitrogen
deposition. Soil Biology and
Biochemistry 32: 603-613.
- Magill, A. H., Aber, J. D. 2000. Variation in soil net
mineralization rates with dissolved organic carbon additions. Soil Biology and
Biochemistry 32: 597-601.
- Magill, A. H., Aber, J. D., Berntson, G. M., McDowell, W. H., Nadelhoffer, K. J., Melillo, J. M., Steudler, P. A. 2000. Long-term nitrogen additions and
nitrogen saturation in two temperate forests. Ecosystems 3: 238-253.
- Magill, A. H., Aber, J. D., Currie, W. S., Nadelhoffer, K. J., Martin, M. E., McDowell, W. H., Melillo, J. M., Steudler, P. A. 2004. Ecosystem Response to 15 years
of Chronic Nitrogen Additions at the Harvard Forest LTER, Massachusetts,
USA. Forest Ecology and
Management 196: 7-28.
- Magill, A. H., Aber, J. D., Hendricks, J. J., Bowden, R. D., Melillo, J. M., Steudler, P. A. 1997. Biogeochemical response of
forest ecosystems to simulated chronic nitrogen deposition. Ecological Applications 7: 402-415.
- Magill, A. H., Downs, M. R., Nadelhoffer, K. J., Hallett, R. A., Aber, J. D. 1996. Forest ecosystem response to
four years of chronic nitrate and sulfate additions at Bear Brooks
Watershed, Maine, USA. Forest Ecology and
Management 84: 29-37.
- Maran, A. M 2015. Predator Contributions to
Belowground Responses to Warming. Thesis, Bowling Green State
University.
- Mason, R. E., Craine, J. M., Lany, N. K., Jonard, M., Ollinger, S. V., Groffman, P. M., Fulweiler, R. W., Angerer, J., Read, Q. D., Reich, P. B., Templer, P. H., Elmore, A. J. 2022. Evidence, causes, and
consequences of declining nitrogen availability in terrestrial
ecosystems. Science 376: eabh3767.
- Mason, R. E., Craine, J. M., Lany, N. K., Jonard, M., Ollinger, S. V., Groffman, P. M., Fulweiler, R. W., Angerer, J., Read, Q. D., Reich, P. B., Templer, P. H., Elmore, A. J. 2022. Explanations for nitrogen
decline—Response. Science 376: 1170-1170.
- Maynard, D. S., Covey, K. R., Crowther, T. W., Sokol, N. W., Morrison, E. W., Frey, S. D., Van Diepen, L. T. A., Bradford, M. A. 2018. Species associations overwhelm
abiotic conditions to dictate the structure and function of wood-decay
fungal communities. Ecology 99: 801-811.
- McClaugherty, C. A., Linkins, A. E. 1989. Temperature responses of enzymes
in two forest soils. Soil Biology and
Biochemistry 22: 29-33.
- McDowell, W. H., Currie, W. S., Aber, J. D., Yano, Y. 1998. Effects of chronic nitrogen
amendment on production of dissolved organic carbon and nitrogen in forest
soils. Water, Air and Soil
Pollution 105: 175-182.
- McDowell, W. H., Magill, A., Aikenhead-Peterson, J.
A., Aber, J. D., Merriam, J. L., Kaushal, S. S. 2004. Effects of chronic nitrogen
amendment on dissolved organic matter and inorganic nitrogen soil
solution. Forest Ecology and
Management 196: 29-41.
- McFarlane, K. J., Torn, M. S., Hanson, P. J., Porras, R. C., Swanston, C. W., Callaham, M. A., Guiderson, T. P. 2012. Comparison of soil organic
matter dynamics at five temperate deciduous forests with physical
fractionation and radiocarbon measurements. Biogeochemistry 112: 457-476.
- McGuire, A. D., Melillo, J. M., Kicklighter, D. W., Joyce, L. A. 1995. Equilibrium responses of soil
carbon to climate change: Empirical and process-based estimates. Journal of Biogeography 22: 785-796.
- McLauchlan, K. K., Craine, J. M., Oswald, W. W., Leavitt, P. R., Likens, G. E. 2007. Changes in nitrogen cycling
during the past century in a northern hardwood forest. PNAS 104: 7466-7470.
- McNulty, S. G., Aber, J. D. 1993. Effect of chronic nitrogen
additions on nitrogen cycling in a high elevation spruce-fir stand. Canadian Journal of Forest
Research 23: 1252-1263.
- McNulty, S. G., Aber, J. D., McLellan, T. M., Katt, S. M. 1990. Nitrogen cycling in high
elevation forests of the U.S. in relation to nitrogen deposition. Ambio 19: 38-40.
- Melillo, J. M. 1996. Elevated carbon dioxide, litter
quality and decomposition. In: Breymeyer, A. I., Hall, D. O., Melillo, J. M., Ågren, G., Global Change: Effects on
Coniferous Forests and Grasslands, SCOPE, John Wiley & Sons, Chichester, England.
- Melillo, J. M., Aber, J. D., Linkins, A. E., Ricca, A., Fry, B., Nadelhoffer, K. 1989. Carbon and nitrogen dynamics
along the decay continuum: Plant litter to soil organic matter. Plant and Soil 115: 189-198.
- Melillo, J. M., Aber, J. D., Linkins, A. E., Ricca, A., Fry, B., Nadelhoffer, K. 1989. Carbon and nitrogen dynamics
along the decay continuum: Plant litter to soil organic matter. In: Clarholm, M., Bergstrom, L., Ecology of Arable Land, Kluwer Academic Publ., Dordrecht, Netherlands.
- Melillo, J. M., Butler, S., Johnson, J., Mohan, J., Steudler, P. A., Lux, H., Burrows, E., Bowles, F. P., Smith, R., Scott, L., Vario, C., Hill, T., Burton, A. J., Zhou, Y., Tang, J. 2011. Soil-warming carbon–nitrogen
interactions and forest carbon budgets. PNAS 108: 9508-9512.
- Melillo, J. M., Frey, S. D., DeAngelis, K. M., Werner, W. J., Bernard, M. J., Bowles, F. P., Pold, G., Knorr, M. A., Grandy, A. S. 2017. Long-term pattern and magnitude
of soil carbon feedback to the climate system in a warming world. Science 358: 101-105.
- Melillo, J. M., Kicklighter, D. W., McGuire, A. D., Peterjohn, W. T., Newkirk, K. 1995. Global change and its effects on
soil organic carbon stocks. In: Zepp, R., Sonntag, C. H., Report of the Dahlem Workshop on
the Role of Nonliving Organic Matter in the Earth's Carbon
Cycle, John Wiley and Sons, New York.
- Melillo, J. M., Kicklighter, D. W., Tian, H., Butler, S. 2010. Fertilizing Change:
Carbon-Nitrogen Interactions and Carbon Storage in Land Ecosystems. In: Hillel, D., Rosenzweig, C., Handbook of Climate Change and
Agroecosystems: Impacts, Adaptation, and Mitigation, Imperial College Press, London, England.
- Melillo, J. M., Steudler, P. A. 1989. The effect of nitrogen
fertilization on the COS and CS2 emissions from temperate forest
soils. Journal of Atmospheric
Chemistry 9: 411-417.
- Melillo, J. M., Steudler, P. A., Aber, J. D., Bowden, R. D. 1989. Atmospheric deposition and
nutrient cycling. In: Andreae, M. O., Schimel, D. S., Exchange of Trace Gases Between
Terrestrial Ecosystems and the Atmosphere, John Wiley and Sons, New York.
- Melillo, J. M., Steudler, P. A., Aber, J. D., Newkirk, K., Lux, H., Bowles, F. P., Catricala, C., Magill, A., Ahrens, T., Morrisseau, S., Burrows, E., Nadelhoffer, K. 2004. Soil warming - a major
consequence of global climate change. In: Foster, D. R., Aber, J. D., Forests in Time: The
Environmental Consequences of 1000 Years of Change in New England, Yale University Press, New Haven, CT.
- Meredith, L. K., Ogée, J., Boye, K., Singer, E., Wingate, L., von Sperber, C., Sengupta, A., Whelan, M., Pang, E., Keiluweit, M., Brüggemann, N., Berry, J. A., Welander, P. V. 2019. Soil exchange rates of COS and
CO18O differ with the diversity of microbial communities and their carbonic
anhydrase enzymes. The ISME Journal 13: 290-300.
- Merriam, J., McDowell, W. H., Currie, W. S. 1996. A chemiluminescent method for
the measurement of total dissolved nitrogen in environmental samples. Soil Science Society of America
Journal 60: 1050-1055.
- Miao, S. L., Wayne, P. M., Bazzaz, F. A. 1992. Elevated CO2 differentially
alters the responses of co-occurring birch and maple seedlings to moisture
gradients. Oecologia 90: 300-304.
- Micks, P. 1994. Soil respiration and nitrogen
additions in two forest stands: short- and long-term responses. Thesis, University of New Hampshire.
- Micks, P., Aber, J. D., Boone, R. D., Davidson, E. A. 2004. Short-term soil respiration and
nitrogen immobilization response to nitrogen applications in control and
nitrogen-enriched temperate forests. Forest Ecology and
Management 196: 57-70.
- Micks, P., Downs, M. R., Magill, A. H., Nadelhoffer, K. J., Aber, J. D. 2004. Decomposing litter as a sink for
15N-enriched additions to an oak forest and a red pine plantation. Forest Ecology and
Management 196: 71-87.
- Millikin, C. S., Bowden, R. D. 1996. Soil respiration in pits and
mounds following an experimental hurricane. Soil Science Society of America
Journal 60: 1951-1953.
- Minocha, R., Long, S., Magill, A. H., Aber, J. D., McDowell, W. H. 2000. Foliar free polyamine and
inorganic ion content in relation to soil and soil solution chemistry in two
fertilized stands at the Harvard Forest, Massachusetts. Plant and Soil 222: 119-137.
- Mitchell, M. F., MacLean, M. Graham, DeAngelis, K. M. 2022. Microbial necromass response to
soil warming: A meta-analysis. Frontiers in Soil
Science 2: 987178.
- Moore, J. A. M., Anthony, M. A., Pec, G. J., Trocha, L. K., Trzebny, A., Geyer, K. M., van Diepen, L. T. A., Frey, S. D. 2021. Fungal community structure and
function shifts with atmospheric nitrogen deposition. Global Change Biology 27: 1349-1364.
- Moorehead, D. L., Currie, W. S., Rastetter, E. B., Parton, W. J., Harmon, M. E. 1999. Climate and litter quality
controls on decomposition: an analysis of modeling approaches. Global Biogeochemical
Cycles 13: 575-589.
- Moraes, J. F. L., Cerri, C. C., Melillo, J. M., Kicklighter, D. W., Neill, C., Skole, D. L., Steudler, P. A. 1995. Soil carbon stocks of the
Brazilian Amazon Basin. Soil Science Society of America
Journal 59: 244-247.
- Morrison, E. 2012. Effects of nitrogen
fertilization on fungal community structure in a temperate hardwood forest:
implicit links between structure, function, and resilience. Thesis, University of New Hampshire.
- Morrison, E. W., Frey, S. D., Sadowsky, J. J., van Diepen, L. T. A., Thomas, W. K., Pringle, A. 2016. Chronic nitrogen additions
fundamentally restructure the soil fungal community in a temperate
forest. Fungal Ecology 23: 48-57.
- Morrison, E. W., Pringle, A., Van Diepen, L. T. A., Frey, S. D. 2018. Simulated nitrogen deposition
favors stress-tolerant fungi with low potential for decomposition. Soil Biology and
Biochemistry 125: 75-85.
- Morrison, E. W., Pringle, A., Van Diepen, L. T. A., Grandy, A. S., Melillo, J. M., Frey, S. D. 2019. Warming alters fungal
communities and litter chemistry with implications for soil carbon
stocks. Soil Biology and
Biochemistry 132: 120-130.
- Morrison, E. W., Whitney, S. A., Geyer, K. M., Sevigny, J. L., Grandy, A. S., Thomas, W. K., DeAngelis, K. M., Frey, S. D. 2022. Evidence for a genetic basis in
functional trait tradeoffs with microbial growth rate but not growth
yield. Soil Biology and
Biochemistry 172: 108765.
- Morrow, M. A.
Pold,
G., DeAngelis, K. M. 2020. Draft Genome Sequence of a
Terrestrial Planctomycete, Singulisphaera sp. Strain GP187, Isolated from
Forest Soil. Microbiology Resource
Announcements 9: e00956-20, 3 pp.
- Munger, J. W., Barford, C. C., Wofsy, S. C. 2004. Exchanges between the forest and
atmosphere. In: Foster, D. R., Aber, J. D., Forests in Time: The
Environmental Consequences of 1000 Years of Change in New England, Yale University Press, New Haven, CT.
- Nadelhoffer, K. J., Boone, R. D., Bowden, R. D., Canary, J. D., Kaye, J., Micks, P., Ricca, A., McDowell, W. H., Aitkenhead, J. 2004. The DIRT experiment: litter and
root influences on forest soil organic matter stocks and function. In: Foster, D. R., Aber, J. D., Forests in Time: The
Environmental Consequences of 1000 Years of Change in New England, Yale University Press, New Haven, CT.
- Nadelhoffer, K. J., Bouwman, A. F., Delaney, M., Melillo, J. M., Schäfer, W., Scholes, M. C., Scholes, R. J., Sonntag, C. H., Sunda, W., Veldkamp, E., Welch, E. B. 1995. Effects of climate change and
human perturbations on interactions between non-living organic matter and
nutrients. In: Zepp, R. G., Sonntag, C. H., The Role of Nonliving Organic
Matter in the Earth's Carbon Cycle, John Wiley & Sons, New York, NY.
- Nadelhoffer, K. J., Bowden, R. D., Boone, R. D., Lajtha, K. 2000. Controls on forest soil organic
matter development and dynamics: chronic litter manipulation as a potential
international LTER activity. In: Lajtha, K., Vanderbilt, K., Cooperation in Long Term
Ecological Research in Central and Eastern Europe, Oregon State University, Corvallis, OR.
- Nadelhoffer, K. J., Colman, B. P., Currie, W. S., Magill, A. H., Aber, J. D. 2004. Decadal scale fates of 15N
tracers added to oak and pine stands under ambient and elevated N inputs at
the Harvard Forest (USA). Forest Ecology and
Management 196: 89-107.
- Nadelhoffer, K. J., Downs, M. R., Fry, B. 1999. Sinks for 15N-enriched additions
to an oak forest and a red pine plantation. Ecological Applications 9: 72-86.
- Nadelhoffer, K. J., Downs, M. R., Fry, B., Aber, J. D., Magill, A. H., Melillo, J. M. 1995. The fate of 15N-labelled nitrate
additions to a northern hardwood forest in eastern Maine, USA. Oecologia 103: 292-301.
- Nadelhoffer, K. J., Downs, M. R., Fry, B., Magill, A., Aber, J. D. 1999. Controls on N retention and
exports in a fertilized watershed. Environmental Monitoring &
Assessment 55: 187-210.
- Nadelhoffer, K. J., Fry, B. 1994. Nitrogen isotope studies in
forest ecosystems. In: Lajtha, K., Michener, R., Stable Isotopes in
Ecology, Blackwell Scientific
Publications, Oxford, UK.
- Nadelhoffer, K. J., Raich, J. W. 1992. Fine root production estimates
and belowground carbon allocation in forest ecosystems. Ecology 73: 1139-1147.
- Nadelhoffer, K. J., Raich, J. W., Aber, J. D. 1998. A global trend in belowground
carbon allocation: comment. Ecology 79: 1822-1825.
- Nadelhoffer, K. J., Raich, J. W., Aber, J. D. 1998. Ecosystem stoichiometry: carbon
budgets and fine root production in forests. Ecology 79: 1822-1825.
- Neill, C., Cerri, C. C., Melillo, J. M., Feigl, B. J., Steudler, P. A., Moraes, J. F. L., Piccolo, M. C. 1997. Soil carbon stocks and dynamics
following deforestation for pasture in Rondônia. In: Lal, R., Kimble, J. M., Follett, R. F., Stewart, B. A., Soil Processes and the Carbon
Cycle, CRC Press, New York.
- Neill, C., Fry, B., Melillo, J. M., Steudler, P. A., Moraes, J. L., Cerri, C. C. 1996. Forest- and pasture-derived
carbon contributions to organic matter stocks and respiration of tropical
pasture soils. Oecologia 107: 113-119.
- Neill, C., Melillo, J. M., Steudler, P. A., Cerri, C. C., Moraes, J. F. L., Piccolo, M. C., Brito, M. 1997. Soil organic matter stocks
following forest clearing for pasture in the southwestern Brazilian
Amazon. Ecological Applications 7: 1216-1225.
- Neill, C., Piccolo, M. C., Cerri, C. C., Steudler, P. A., Melillo, J. M., Brito, M. 1997. Net nitrogen mineralization and
net nitrification rates in soils following deforestation for pasture across
the southwestern Brazilian Amazon Basin landscape. Oecologia 110: 243-252.
- Neill, C., Piccolo, M. C., Melillo, J. M., Steudler, P. A., Cerri, C. C. 2000. Nitrogen dynamics in Amazon
forest and pasture soils measured by 15N pool dilution. Soil Biology and
Biochemistry 31: 567-572.
- Neill, C., Piccolo, M. C., Steudler, P. A., Melillo, J. M., Feigl, B. J., Cerri, C. C. 1995. Nitrogen dynamics in soils of
forests and active pastures in the western Brazilian Amazon Basin. Soil Biology and
Biochemistry 27: 1167-1175.
- Nkongolo, N. V., Johnson, S., Eivazi, F., Schmidt, K. 2010. Greenhouse gases fluxes and soil
thermal properties in a pasture in central Missouri. Journal of Environmental
Sciences 22: 1029-1039.
- Ochs, A., Siddig, A. A. 2017. Response of Red-Backed
Salamanders (Plethodon Cinereus) to Changes in Hemlock Forest Soil Driven by
Invasive Hemlock Woolly Adelgid (Adelges Tsugae). Environments 4: article 8.
- Ollinger, S. V., Sala, O., Ågren, G., Berg, B., Davidson, E. A., Field, C. B., Lerdau, M. T., Neff, J., Scholes, M. C., Sterner, R. 2003. New Frontiers in the Study of
Element Interactions. In: Melillo, J., Field, C. B., Interactions of the Major
Biogeochemical
Cycles – Global Change and Human Impacts. SCOPE
61, Island Press, Washington, DC.
- Ollinger, S. V., Smith, M. L., Martin, M. E., Hallett, R. A., Goodale, C. L., Aber, J. D. 2002. Regional variation in foliar
chemistry and N cycling among forests of diverse history and
composition. Ecology 83: 339-355.
- Orwig, D. A., Barker Plotkin, A., Davidson, E. A., Lux, H., Savage, K., Ellison, A. M. 2013. Foundation species loss affects
vegetation structure more than ecosystemfunction in a northeastern USA
forest. PeerJ 1: e41.
- Orwig, D. A., Cobb, R. C., D'Amato, A. W., Kizlinski, M. L., Foster, D. R. 2008. Multi-year ecosystem response to
hemlock woolly adelgid infestation in southern New England Forests. Canadian Journal of Forest
Research 38: 834-843.
- Orwig, D. A., Cobb, R. C., Kizlinski, M. L., Currie, S. J., Foster, D. R. 2000. Ecosystem response to hemlock
decline from hemlock woolly adelgid in southern New England. Proceedings of ESA. .
- Orwig, D. A., Foster, D. R. 1998. Ecosystem response to an
imported pathogen: the hemlock woolly adelgid. Arnoldia 58: 41-44.
- Pardo, L. H., Templer, P. H., Goodale, C. L., Duke, S., Groffman, P. M., Adams, M. B., Boeckx, P., Boggs, J., Campbell, J. L., Compton, J. E., Emmett, B. A., Gundersen, P., Kjønaas, J., Lovett, G. M., Mack, M., Magill, A. H., Mitchell, M. J., Mbila, M., McGee, G., McNulty, S. G., Nadelhoffer, K. J., Colman, B. P., Ollinger, S. V., Ross, D., Rueth, H., Rustad, L. E., Schaberg, P., Schiff, S., Schleppi, P., Spoelstra, J., Wessel, W. 2006. Regional Assessment of N
saturation using foliar and root d. Biogeochemistry 80: 143-171.
- Parton, W., Silver, W. L., Burke, I. C., Grassens, L., Harmon, M. E., Currie, W. S., King, J., Adair, E. C., Brandt, L. A., Hart, S. C., Fasth, B. 2007. Global-scale similarities in
nitrogen release patterns during long-term decomposition. Science 315: 361-364.
- Pec, G. J., Van Diepen, L. T. A., Knorr, M., Grandy, A. S., Melillo, J. M., DeAngelis, K. M., Blanchard, J. L., Frey, S. D. 2021. Fungal community response to
long-term soil warming with potential implications for soil carbon
dynamics. Ecosphere 12: article e03460, 13 pp.
- Peterjohn, W. T., Melillo, J. M., Bowles, F. P., Steudler, P. A. 1993. Soil warming and trace gas
fluxes: experimental design and preliminary flux results. Oecologia 93: 18-24.
- Peterjohn, W. T., Melillo, J. M., Steudler, P. A., Newkirk, K. M., Bowles, F. P., Aber, J. D. 1995. Responses of trace gas fluxes
and N availability to experimentally elevated soil temperatures. Ecological Applications 4: 617-625.
- Phillips, S. C., Varner, R. K., Frolking, S. E., Munger, J. W., Bubier, J. L., Wofsy, S. C., Crill, P. M. 2010. Interannual, Seasonal, and Diel
Variation in Soil Respiration Relative to Ecosystem Respiration at a Wetland
to Upland Slope at Harvard Forest. Journal of Geophysical
Research 115: G02019.
- Pisani, O., Frey, S. D., Simpson, A. J., Simpson, M. J. 2015. Soil warming and nitrogen
deposition alter soil organic matter composition at the
molecular-level. Biogeochemistry 123: 391-409.
- Pold, G., Billings, A. F., Blanchard, J. L., Burkhardt, D. B., Frey, S. D., Melillo, J. M., Schnabel, J., van Diepen, L. T. A., DeAngelis, K. M. 2016. Long-term warming alters
carbohydrate degradation potential in temperate forest soils. Applied and Environmental
Microbiology 82: 6518-6530.
- Pold, G., Conlon, E. M., Huntemann, M., Pillay, M., Mikhailova, N., Stamatis, D., Reddy, T. B. K., Daum, C., Shapiro, N., Kyrpides, N., Woyke, T., DeAngelis, K. M. 2018. Genome Sequence of
Verrucomicrobium sp. Strain GAS474, a Novel Bacterium Isolated from
Soil. ASM Genome Announcements 6, e01451-17: 2 pp.
- Pold, G., Domeignoz-Horta, L.
A., DeAngelis, K. M. 2020. Heavy and wet: The consequences
of violating assumptions of measuring soil microbial growth efficiency using
the 18O water method. Elementa: Science of the
Anthropocene 8: article 20, 13 pp.
- Pold, G., Domeignoz-Horta, L.
A., Morrison, E. W., Frey, S. D., Sistla, S. A., DeAngelis, K. M. 2020. Carbon Use Efficiency and Its
Temperature Sensitivity Covary in Soil Bacteria. mBio 11: e02293-19, 16 pp.
- Pold, G., Grandy, A. S., Melillo, J. M., DeAngelis, K. M. 2017. Changes in substrate
availability drive carbon cycle response to chronic warming. Soil Biology and
Biochemistry 110: 68-78.
- Pold, G., Huntemann, M., Pillay, M., Mikhailova, N., Stamatis, D., Reddy, T. B. K., Daum, C., Shapiro, N., Kyrpides, N., Woyke, T., DeAngelis, K. M. 2018. Draft genome sequences of three
strains of a novel Rhizobiales species isolated from forest soil. ASM Genome Announcements 6, e01452-17: 2 pp.
- Pold, G., Sistla, S. A., DeAngelis, K. M. 2019. Metabolic tradeoffs and
heterogeneity in microbial responses to temperature determine the fate of
litter carbon in simulations of a warmer world. Biogeosciences 16: 4875–4888.
- Porras, R. C., Hicks Pries, C. E., McFarlane, K. J., Hanson, P. J., Torn, M. S. 2017. Association with pedogenic iron
and aluminum: effects on soil organic carbon storage and stability in four
temperate forest soils. Biogeochemistry 133: 333-345.
- Raciti, S. M., Hutyra, L. R., Rao, P., Finzi, A. C. 2012. Inconsistent definitions of
'urban' result in different conclusions about the size of urban
carbon and nitrogen stocks. Ecological Applications 22: 1015-1035.
- Raich, J. W., Bowden, R. D., Steudler, P. A. 1990. Comparison of two static chamber
techniques for determination of CO2 efflux from forest soils. Journal of Soil Science Society
of America 54: 1754-1757.
- Rastetter, E. B., Kwiatkowski, B. L., Kicklighter, D. W., Barker Plotkin, A., Genet, H., Nippert, J. B., O’Keefe, K., Perakis, S. S., Porder, S., Roley, S. S., Ruess, R. W., Thompson, J. R., Wieder, W. R., Wilcox, K., Yanai, R. D. 2022. N and P constrain C in
ecosystems under climate change: Role of nutrient redistribution,
accumulation, and stoichiometry. Ecological Applications 32: e2684.
- Read*, L., Lawrence, D. 2003. Litter nutrient dynamics in
secondary dry tropical forests of the Southern Yucatan. Ecosystems 6: 747-761.
- Roberts, A. J., Johnson, N. C. 2021. Effects of Mob-Grazing on Soil
and Range Quality Vary with Plant Species and Season in a Semiarid
Grassland. Rangeland Ecology &
Management 79: 139-149.
- Robertson, G. P., Wedin, D., Groffman, P. M., Blair, J. M., Holland, E., Nadelhoffer, K. J., Harris, D 1999. Soil carbon and nitrogen
availability: nitrogen mineralization, nitrification and soil respiration
potentials. In: Robertson, G. P., Bledsoe, C. S., Coleman, D. C., Sollins, P., Standard Soil Methods for Long
Term Ecological Research, Oxford University Press, New York.
- Romero-Olivares, A.
L., Davie-Martin, C. L., Kramshøj, M., Rinnan, R., Frey, S. D. 2022. Soil volatile organic compound
emissions in response to soil warming and nitrogen deposition. Elementa: Science of the
Anthropocene 10: 00065.
- Rousk, J., Frey, S. D. 2015. Revisiting the hypothesis that
fungal-to-bacterial dominance characterises turnover of soil organic matter
and nutrients. Ecological Monographs 85: 457-472.
- Rousk, J., Frey, S. D., Baath, E. 2012. Temperature adaptation of
bacterial communities in experimentally warmed forest soils. Global Change Biology 18: 3252-3258.
- Roy Chowdhury, P., Golas, S. M., Alteio, L. V., Stevens, J. T. E., Billings, A. F., Blanchard, J. L., Melillo, J. M., DeAngelis, K. M. 2021. The Transcriptional Response of
Soil Bacteria to Long-Term Warming and Short-Term Seasonal Fluctuations in a
Terrestrial Forest. Frontiers in
Microbiology 12: article 666558, 16 pp.
- Saifuddin, M., Abramoff, R. Z., Davidson, E. A., Dietze, M. C., Finzi, A. C. 2021. Identifying Data Needed to
Reduce Parameter Uncertainty in a Coupled Microbial Soil C and N
Decomposition Model. Journal of Geophysical Research:
Biogeosciences 126: e2021JG006593, 21 pp.
- Saifuddin, M., Bhatnagar, J. M., Phillips, R. P., Finzi, A. C. 2021. Ectomycorrhizal fungi are
associated with reduced nitrogen cycling rates in temperate forest soils
without corresponding trends in bacterial functional groups. Oecologia 196: 863–875.
- Savage, K. E., Davidson, E. A. 2001. Interannual variation of soil
respiration in two New England forests. Global Biogeochemical
Cycles 15: 337-350.
- Savage, K. E., Davidson, E. A. 2003. A comparison of manual and
automated systems for soil CO2 flux measurements: trade-offs between spatial
and temporal resolution. Journal of Experimental
Botany 54: 891-899.
- Savage, K. E., Davidson, E. A., Abramoff, R. Z., Finzi, A. C., Giasson, M.-A. 2018. Partitioning soil respiration:
quantifying the artifacts of the trenching method. Biogeochemistry 140: 53-63.
- Savage, K. E., Davidson, E. A., Richardson, A. D., Hollinger, D. Y. 2009. Three scales of temporal
resolution from automated soil respiration. Agricultural and Forest
Meteorology 149: 2012-2021.
- Savage, K., Davidson, E. A., Tang, J. 2013. Diel patterns of autotrophic and
heterotrophic respiration among phenological stages. Global Change Biology 19: 1151-1159.
- Savage, K., Parton, W. J., Davidson, E. A., Trumbore, S. E., Frey, S. D. 2013. Long-term changes in forest
carbon under temperature and nitrogen amendments in a temperate northern
hardwood forest. Global Change Biology 19: 2389-2400.
- Schmidt, L. 1999. Exploration of possible feedback
mechanism for carbon and nitrogen cycling in a forested ecosystem in
response to artificial soil warming. Thesis, Brown University.
- Schnabel, J. 2016. Microbial community response to
long-term warming in temperate forest soils. Thesis, University of Massachusetts.
- Shaver, G. R., Canadell, J., Chapin, F. S. III, Gurevitch, J., Harte, J., Henry, G., Ineson, P., Jonasson, S., Melillo, J. M., Pitelka, L., Rustad, L. 2000. Global Warming and Terrestrial
Ecosystems: A Conceptual Framework for Analysis. BioScience 50: 871-882.
- Sierra, C. A., Trumbore, S. E., Davidson, E. A., Frey, S. D., Savage, K. E., Hopkins, F. M. 2012. Predicting decadal trends and
transient responses of radiocarbon storage and fluxes in a temperate forest
soil. Biogeosciences 9: 3013-3028.
- Sihi, D., Davidson, E. A., Chen, M., Savage, K. E., Richardson, A. D., Keenan, T. F., Hollinger, D. Y. 2018. Merging a mechanistic enzymatic
model of soil heterotrophic respiration into an ecosystem model in two
AmeriFlux sites of northeastern USA. Agricultural And Forest
Meteorology 252: 155-166.
- Sinsabaugh, R. L., Lauber, C. L., Weintraub, M. N., Ahmed, B., Allison, S. D., Crenshaw, C., Contosta, A. R., Cusack, D., Frey, S., Gallo, M. E., Gartner, T. B., Hobbie, S. E., Holland, K., Keeler, B. L., Powers, J. S., Stursova, C., Takacs-Vesbach, C., Waldrop, M., Wallenstein, M., Zak, D. R., Zeglin, L. H. 2008. Stoichiometry of soil enzyme
activity at global scale. Ecology Letters 11: 1252-1264.
- Smith*, I. A., Hutyra, L., Reinmann, A. B., Thompson, J. R., Allen, D. W. 2019. Evidence for edge enhancements
of soil respiration in temperate forests. Geophysical Research
Letters 46: 4278-4287.
- Sousa, D., Fisher, J. B., Galvan, F. R., Pavlick, R. P., Cordell, S., Giambelluca, T. W., Giardina, C. P., Gilbert, G. S., Imran-Narahari, F., Litton, C. M., Lutz, J. A., North, M. P., Orwig, D. A., Ostertag, R., Sack, L., Phillips, R. P. 2021. Tree Canopies Reflect
Mycorrhizal Composition. Geophysical Research
Letters 48: e2021GL092764, 9 pp.
- Steudler, P. A., Bowden, R. D., Melillo, J. M., Aber, J. D. 1989. Influence of nitrogen
fertilization on methane uptake in temperate forest soils. Nature 341: 314-316.
- Steudler, P. A., Jones, R. D., Castro, M. S., Melillo, J. M., Lewis, D. L. 1996. Microbial controls of methane
oxidation in temperate forest and agricultural soils. In: Murrell, J. C., Kelly, D. P., Microbiology of Atmospheric
Trace Gases: Sources, Sinks and Global Change Process, Springer-Verlag, Berlin, Heidelberg.
- Stoica, I., Tabatabaei Anaraki,
M., Muratore, T., Knorr, M., Frey, S. D., Simpson, M. J. 2023. Chronic Warming and
Nitrogen-Addition Alter Soil Organic Matter Molecular Composition Distinctly
in Tandem Compared to Individual Stressors. ACS Earth and Space
Chemistry 7: 609-622.
- Sulzman, E., Brant, J., Bowden, R. D., Lajtha, K. 2005. Contribution of aboveground
litter, belowground litter, and rhizosphere respiration to total soil CO2
efflux in an old growth coniferous forest. Biogeochemistry 73: 231-256.
- Tang, M. H., Porder, S., Lovett, G. M. 2012. Species differences in nitrate
reductase activity are unaffected by nitrogen enrichment in northeastern
U.S. forests. Forest Ecology and
Management 275: 52-59.
- Templer, P. H., McCann, T. M. 2010. Effects of the hemlock woolly
adelgid on nitrogen losses from urban and rural northern forest
ecosystems. Ecosystems 13: 1215-1226.
- Templer, P. H., Toll, J., Hutyra, L. R., Raciti, S. M. 2015. Nitrogen and Carbon Export from
Urban Areas Through Removal and Export of Litterfall. Environmental Pollution 197: 256-261.
- Tonitto, C., Goodale, C. G., Weiss, M. S., Frey, S. D., Ollinger, S. V. 2014. The effect of nitrogen addition
on soil organic matter dynamics: A model analysis of the Harvard Forest
Chronic Nitrogen Amendment experiment and soil carbon response to
anthropogenic N deposition. Biogeochemistry 117: 431-454.
- Tran, W. C., Sullivan, B., Kitzmiller, C. E., Choudoir, M., Simoes, R., Dayarathne, N., DeAngelis K. M. 2023. Draft genome sequence of
Paenibacillus sp. strain RC67, an isolate from a long-term forest soil
warming experiment in Petersham, Massachusetts. Microbiology Resource
Announcements 12: e00373-23.
- Trumbore, S. E., Chadwick, O. A., Amundson, R. 1996. Rapid exchange between soil
carbon and atmospheric carbon dioxide driven by temperature change. Science 272: 393-396.
- Turlapati, S. A., Minocha, R., Bhiravarasa, P. S., Tisa, L. S., Thomas, W. K., Minocha, S. C. 2013. Chronic N-amended soils exhibit
an altered bacterial community structure in Harvard Forest, MA, USA. FEMS Microbiology
Ecology 83: 478-493.
- Turlapati, S. A., Minocha, R., Long, S., Ramsdell, J., Minocha, S. C. 2015. Oligotyping reveals stronger
relationship of organic soil bacterial community structure with N-amendments
and soil chemistry in comparison to that of mineral soil at Harvard Forest,
MA, USA. Frontiers in
Microbiology 6: 49, 16 pp.
- Van Diepen, L. T. A., Frey, S. D., Landis, E. A., Morrison, E. W., Pringle, A. 2017. Fungi exposed to chronic
nitrogen enrichment are less able to decay leaf litter. Ecology 98: 5-11.
- Van Diepen, L. T. A., Frey, S. D., Sthultz, C. M., Morrison, E. W., Minocha, R., Pringle, A. 2015. Changes in litter quality caused
by simulated nitrogen deposition reinforce the N-induced suppression of
litter decay. Ecosphere 6: art205.
- VandenEnden, L., Anthony, M. A., Frey, S. D., Simpson, M. J. 2021. Biogeochemical evolution of soil
organic matter composition after a decade of warming and nitrogen
addition. Biogeochemistry 156: 161-175.
- Vendettuoli*, J. F., Orwig, D. A., Krumins, J. A., Waterhouse*, M. D., Preisser, E. L. 2015. Hemlock woolly adelgid alters
fine root bacterial abundance and mycorrhizal associations in eastern
hemlock. Forest Ecology and
Management 339: 112-116.
- Venterea, R. T., Groffman, P. M., Verchot, L. V., Magill, A. H., Aber, J. D. 2004. Gross nitrogen process rates in
temperate forest soils exhibiting symptoms of nitrogen saturation. Forest Ecology and
Management 196: 129-142.
- Venterea, R. T., Groffman, P. M., Verchot, L. V., Magill, A. H., Aber, J. D., Steudler, P. A. 2003. Nitrogen oxide gas emissions
from temperate forest soils receiving long-term nitogen inputs. Global Change Biology 9: 346-357.
- Werner, W. J., Sanderman, J., Melillo, J. M. 2020. Decreased Soil Organic Matter in
a Long‐Term Soil Warming Experiment Lowers Soil Water Holding Capacity and
Affects Soil Thermal and Hydrological Buffering. Journal of Geophysical Research
- Biogeosciences 125: article e2019JG005158, 14 pp.
- Whalen, E. D. 2017. Manganese limitation as a
mechanism for reduced decomposition in soils under long-term atmospheric
nitrogen deposition. Thesis, University of New Hampshire.
- Whalen, E. D., Smith, R. G., Grandy, A. S., Frey, S. D. 2018. Manganese limitation as a
mechanism for reduced decomposition in soils under atmospheric nitrogen
deposition. Soil Biology and
Biochemistry 127: 252-263.
- Wieder, W. R., Pierson, D., Earl, S., Lajtha, K., Baer, S. G., Ballantyne, S., Berhe, A. A., Billings, S. A., Brigham, L. M., Chacon, S. S., Fraterrigo, J., Frey, S. D., Georgiou, K, de Graaff, M., Grandy, A. S., Hartman, M. D., Hobbie, S. E., Johnson, C., Kaye, J., Kyker-Snowman, E., Litvak, M. E., Mack, M. C., Malhotra, A., Moore, J. A. M., Nadelhoffer, K., Rasmussen, C., Silver, W. L., Sulman. B. N., Walker. X., Weintraub, S. 2021. SoDaH: the SOils DAta
Harmonization database, an open-source synthesis of soil data from research
networks, version 1.0. Earth System Science
Data 13: 1843–1854.
- Williams, M., Rastetter, E. B., Fernandes, D. N., Goulden, M. L., Wofsy, S. C., Shaver, G. R., Melillo, J. M., Munger, J. W., Fan, S., Nadelhoffer, K. J. 1996. Modeling the soil-plant
atmosphere continuum in a Quercus-Acer stand at Harvard Forest: the
regulation of stomatal conductance by light nitrogen and soil/plant
hydraulic properties. Plant, Cell and
Environment 19: 911-927.
- Wilson, H. F., Raymond, P. A., Saiers, J. E., Sobczak, W. V., Xu, N. 2016. Increases in humic and
bioavailable dissolved organic matter in a forested New England headwater
stream with increasing discharge. Marine and Freshwater
Research 67: 1279-1292.
- Xiao, X., Zhang, Q., Saleska, S., Hutyra, L. R., De Camargo, P., Wofsy, S. C., Frolking, S. E., Boles, S., Keller, M., Moore III, B. 2005. Satellite-based modeling of
gross primary production in a seasonally moist tropical evergreen
forest. Remote Sensing of
Environment 94: 105-122.
- Yano, Y., McDowell, W. H., Aber, J. D. 2000. Biodegradable dissolved organic
carbon in forest soil solution and effects of chronic nitrogen
deposition. Soil Biology and
Biochemistry 32: 1743-1751.
- Yorks, T. E., Jenkins, J. C., Leopold, D. J., Raynal, D. J., Orwig, D. A. 1999. Influences of eastern hemlock
mortality on nutrient cycling. Proceedings of Symposium on Sustainable
Management of Hemlock Ecosystems in Eastern North America. Durham, NH.
- Zabaloy, M. C., Frey, S. D., Lehman, R. M., Garland, J. L. 2008. Optimization and validation of
an oxygen-based approach for community-level physiological profiling of
soils. Soil Biology and
Biochemistry 40: 2960-2969.
- Zhang, Q., Phillips, R. P., Manzoni, S., Scott, R. L., Oishi, A. C., Finzi, A. C., Daly, E., Vargas, R., Novick, K. A. 2018. Changes in photosynthesis and
soil moisture drive the seasonal soil respiration-temperature hysteresis
relationship. Agricultural And Forest
Meteorology 259: 184-195.
- Zhong, Y., Chu, C., Myers, J. A., Gilbert, G.y S., Lutz, J. A., Stillhard, J., Zhu, K., Thompson, J., Baltzer, J. L., He, F., LaManna, J. A., Davies, S. J., Aderson-Teixeira, K.
J., Burslem, D. F. R. P., Alonso, A., Chao, K., Wang, X., Gao, L., Orwig, D. A., Yin, X., Sui, X., Su, Z., Abiem, I., Bissiengou, P., Bourg, N., Butt, N., Cao, M., Chang-Yang, C., Chao, W. C., Chapman, H., Chen, Y., Coomes, D. A., Cordell, S., de Oliveira, A. A., Du, H., Fang, S., Giardina, C. P., Hao, Z., Hector, A., Hubbell, S. P., Janík, D., Jansen, P. A., Jiang, M., Jin, G., Kenfack, D., Král, K., Larson, A.J., Li, B., Li, X., Li, Y., Lian, J., Lin, L., Liu, F., Liu, Y., Liu, Y., Luan, F., Luo, Y., Ma, K., Malhi, Y.r, McMahon, S. M., McShea, W., Memiaghe, H., Mi, X., Morecroft, M., Novotny, V., O’Brien, M. J., Ouden, J., Parker, G. G., Qiao, X., Ren, H., Reynolds, G., Samonil, P., Sang, W., Shen, G., Shen, Z., Song, G. M., Sun, I. F., Tang, H., Tian, S., Uowolo, A. L., Uriarte, M., Wang, B., Wang, X., Wang, Y., Weiblen, G. D., Wu, Z., Xi, N., Xiang, W., Xu, H., Xu, K., Ye, W., Yu, M., Zeng, F., Zhang, M., Zhang, Y., Zhu, L., Zimmerman, J. K. 2021. Arbuscular mycorrhizal trees
influence the latitudinal beta-diversity gradient of tree communities in
forests worldwide. Nature Communications 12: article 3137, 12 pp.
- Zhou, Y., Tang, J., Melillo, J. M., Butler, S., Mohan, J. 2011. Root standing crop and chemistry
after six years of soil warming in a temperate forest. Tree Physiology 31: 707-717.
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